[DATALAD RUNCMD] Compute LMU_1/sub-0025354/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025354/ses-1/anat/sub-0025354_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025354/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025354/ses-1/label/catROI_sub-0025354_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/Gz/MD5E-s57776--5f9aa31b2f4645f8459863a878e918c6.mat/MD5E-s57776--5f9aa31b2f4645f8459863a878e918c6.mat

LMU_1/sub-0025354/ses-1/label/catROI_sub-0025354_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/JK/MD5E-s188715--04e73528804ed63365a49d29cca08935.xml/MD5E-s188715--04e73528804ed63365a49d29cca08935.xml

LMU_1/sub-0025354/ses-1/label/catROIs_sub-0025354_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/qF/MD5E-s120026--3bd4c134ed495efe5d778a83b929c751.mat/MD5E-s120026--3bd4c134ed495efe5d778a83b929c751.mat

LMU_1/sub-0025354/ses-1/label/catROIs_sub-0025354_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/5q/MD5E-s332183--62b79795dec4aea0a4016bfd7857cd54.xml/MD5E-s332183--62b79795dec4aea0a4016bfd7857cd54.xml

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kj/F3/MD5E-s213136--de9f45c80a6f5263cfe145cc5bf32712.nii.gz/MD5E-s213136--de9f45c80a6f5263cfe145cc5bf32712.nii.gz

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/25/MD5E-s237819--5ce6f695a2cfb336c7db1acd2d23ae93.nii.gz/MD5E-s237819--5ce6f695a2cfb336c7db1acd2d23ae93.nii.gz

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/Mx/MD5E-s303470--37336fb170be3fd09b12b7d0bce24317.nii.gz/MD5E-s303470--37336fb170be3fd09b12b7d0bce24317.nii.gz

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025354/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/jK/MD5E-s336626--2af73aa038f87389df0f4232817e0c07.nii.gz/MD5E-s336626--2af73aa038f87389df0f4232817e0c07.nii.gz

LMU_1/sub-0025354/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025354/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/Mk/MD5E-s29308--97da1abd7e8c8f1f43a66b58d7fe8989.nii.gz/MD5E-s29308--97da1abd7e8c8f1f43a66b58d7fe8989.nii.gz

LMU_1/sub-0025354/ses-1/mri/aal3_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025354/ses-1/mri/aal3_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/8q/MD5E-s239849--05fd10013c1156de2cc5b77f05f3bf2c.nii.gz/MD5E-s239849--05fd10013c1156de2cc5b77f05f3bf2c.nii.gz

LMU_1/sub-0025354/ses-1/mri/anatomy3_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025354/ses-1/mri/anatomy3_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/qz/MD5E-s172064--6b40e875fc3ba19e133db9b8e8942481.nii.gz/MD5E-s172064--6b40e875fc3ba19e133db9b8e8942481.nii.gz

LMU_1/sub-0025354/ses-1/mri/anon_misub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/JK/MD5E-s5838533--8347c2087e17737923c085a482500d36.nii.gz/MD5E-s5838533--8347c2087e17737923c085a482500d36.nii.gz

LMU_1/sub-0025354/ses-1/mri/anon_msub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/xw/MD5E-s13003059--04019cad1cecfb4291b160a4291d89ca.nii.gz/MD5E-s13003059--04019cad1cecfb4291b160a4291d89ca.nii.gz

LMU_1/sub-0025354/ses-1/mri/cat_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/G8/MD5E-s131399--e7df8227a7051addb4b412fbe2b4705d.nii.gz/MD5E-s131399--e7df8227a7051addb4b412fbe2b4705d.nii.gz

LMU_1/sub-0025354/ses-1/mri/cobra_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025354/ses-1/mri/cobra_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/mK/MD5E-s61317--6b2455800ce52294b9a2b226df73df3c.nii.gz/MD5E-s61317--6b2455800ce52294b9a2b226df73df3c.nii.gz

LMU_1/sub-0025354/ses-1/mri/hammers_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025354/ses-1/mri/hammers_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/X5/MD5E-s186293--578a76c5f0aca092dae0f9c1d55f94ff.nii.gz/MD5E-s186293--578a76c5f0aca092dae0f9c1d55f94ff.nii.gz

LMU_1/sub-0025354/ses-1/mri/ibsr_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025354/ses-1/mri/ibsr_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/2q/MD5E-s195972--029650af1f90b865e35e698f1f124a8c.nii.gz/MD5E-s195972--029650af1f90b865e35e698f1f124a8c.nii.gz

LMU_1/sub-0025354/ses-1/mri/it_sub-0025354_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/Zz/MD5E-s282--94ee8c42fb6e1823e09dd3c36faf1cc5.mat/MD5E-s282--94ee8c42fb6e1823e09dd3c36faf1cc5.mat

LMU_1/sub-0025354/ses-1/mri/it_sub-0025354_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/41/MD5E-s280--3f09d046f155a87372640503c42cc2d6.mat/MD5E-s280--3f09d046f155a87372640503c42cc2d6.mat

LMU_1/sub-0025354/ses-1/mri/iy_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/p0/MD5E-s57288991--5c4da25da24cbe694d1a2567f76d55da.nii.gz/MD5E-s57288991--5c4da25da24cbe694d1a2567f76d55da.nii.gz

LMU_1/sub-0025354/ses-1/mri/julichbrain_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025354/ses-1/mri/julichbrain_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/qK/MD5E-s254051--90217a164c7b5fb07c289063d346edf8.nii.gz/MD5E-s254051--90217a164c7b5fb07c289063d346edf8.nii.gz

LMU_1/sub-0025354/ses-1/mri/lpba40_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025354/ses-1/mri/lpba40_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/7Z/MD5E-s186145--4d65742a44106702c439b9f5fea7606f.nii.gz/MD5E-s186145--4d65742a44106702c439b9f5fea7606f.nii.gz

LMU_1/sub-0025354/ses-1/mri/m0wp1sub-0025354_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025354/ses-1/mri/m0wp2sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/gQ/MD5E-s2284383--aae67f1d19915d7a74d6043b60235161.nii.gz/MD5E-s2284383--aae67f1d19915d7a74d6043b60235161.nii.gz

LMU_1/sub-0025354/ses-1/mri/m0wp3sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/zq/MD5E-s2500813--f9c3ee80610a14e1febea190d4d60959.nii.gz/MD5E-s2500813--f9c3ee80610a14e1febea190d4d60959.nii.gz

LMU_1/sub-0025354/ses-1/mri/mori_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025354/ses-1/mri/mori_sub-0025354_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025354/ses-1/mri/mwp1sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/wZ/MD5E-s2579380--2730ca4b48a5f8134e68cba4e01d7263.nii.gz/MD5E-s2579380--2730ca4b48a5f8134e68cba4e01d7263.nii.gz

LMU_1/sub-0025354/ses-1/mri/mwp2sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025354/ses-1/mri/mwp3sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025354/ses-1/mri/neuromorphometrics_sub-0025354_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025354/ses-1/mri/neuromorphometrics_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025354/ses-1/mri/p0sub-0025354_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/6Z/3w/MD5E-s807055--9988b5efb739fbeed12701dbbfd8406d.nii.gz/MD5E-s807055--9988b5efb739fbeed12701dbbfd8406d.nii.gz

LMU_1/sub-0025354/ses-1/mri/p1sub-0025354_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025354/ses-1/mri/p2sub-0025354_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025354/ses-1/mri/p3sub-0025354_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025354/ses-1/mri/rp1sub-0025354_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025354/ses-1/mri/rp2sub-0025354_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025354/ses-1/mri/rp3sub-0025354_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025354/ses-1/mri/t_sub-0025354_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025354/ses-1/mri/t_sub-0025354_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025354/ses-1/mri/thalamus_sub-0025354_ses-1_run-1_T1w.csv

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LMU_1/sub-0025354/ses-1/mri/thalamus_sub-0025354_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025354/ses-1/mri/wj_sub-0025354_ses-1_run-1_T1w.nii.gz

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