[DATALAD RUNCMD] Compute IPCAS_5/sub-0027291/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_5/sub-0027291/ses-1/anat/sub-0027291_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_5/sub-0027291/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_5/sub-0027291/ses-1/label/catROI_sub-0027291_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/4F/MD5E-s58122--a121b07de505a5c29985398d839b1655.mat/MD5E-s58122--a121b07de505a5c29985398d839b1655.mat

IPCAS_5/sub-0027291/ses-1/label/catROI_sub-0027291_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g5/Fj/MD5E-s188827--0ed74f777cd6163aee743d6b3df7dbaf.xml/MD5E-s188827--0ed74f777cd6163aee743d6b3df7dbaf.xml

IPCAS_5/sub-0027291/ses-1/label/catROIs_sub-0027291_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/MW/MD5E-s120042--eb7b5def57aad989b95f926c252c89f8.mat/MD5E-s120042--eb7b5def57aad989b95f926c252c89f8.mat

IPCAS_5/sub-0027291/ses-1/label/catROIs_sub-0027291_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/2k/MD5E-s332095--b355d5d8c3519d7548ed8e2d88406359.xml/MD5E-s332095--b355d5d8c3519d7548ed8e2d88406359.xml

IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/1g/MD5E-s171536--d44cad22c86b6f7e4a7bc461b075297f.nii.gz/MD5E-s171536--d44cad22c86b6f7e4a7bc461b075297f.nii.gz

IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_5/sub-0027291/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_5/sub-0027291/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027291_ses-1_run-1_T1w.csv

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IPCAS_5/sub-0027291/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_5/sub-0027291/ses-1/mri/aal3_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_5/sub-0027291/ses-1/mri/aal3_sub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_5/sub-0027291/ses-1/mri/anatomy3_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_5/sub-0027291/ses-1/mri/anatomy3_sub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/3G/MD5E-s122505--605d312cf289185cf5865bb987cac928.nii.gz/MD5E-s122505--605d312cf289185cf5865bb987cac928.nii.gz

IPCAS_5/sub-0027291/ses-1/mri/anon_misub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/zv/MD5E-s4151526--20220719f6902f8872ff7f86ddf8ce96.nii.gz/MD5E-s4151526--20220719f6902f8872ff7f86ddf8ce96.nii.gz

IPCAS_5/sub-0027291/ses-1/mri/anon_msub-0027291_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/zw/MD5E-s9644191--302dd6ab162852c093e728c3a3625db8.nii.gz/MD5E-s9644191--302dd6ab162852c093e728c3a3625db8.nii.gz

IPCAS_5/sub-0027291/ses-1/mri/cat_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/cobra_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_5/sub-0027291/ses-1/mri/cobra_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/hammers_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_5/sub-0027291/ses-1/mri/hammers_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/ibsr_sub-0027291_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_5/sub-0027291/ses-1/mri/ibsr_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/it_sub-0027291_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/kJ/MD5E-s283--cb588c830fc4765d3396b65fba68ea97.mat/MD5E-s283--cb588c830fc4765d3396b65fba68ea97.mat

IPCAS_5/sub-0027291/ses-1/mri/it_sub-0027291_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_5/sub-0027291/ses-1/mri/iy_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/julichbrain_sub-0027291_ses-1_run-1_T1w.csv

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IPCAS_5/sub-0027291/ses-1/mri/julichbrain_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/lpba40_sub-0027291_ses-1_run-1_T1w.csv

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IPCAS_5/sub-0027291/ses-1/mri/lpba40_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/m0wp1sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/m0wp2sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/m0wp3sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/mori_sub-0027291_ses-1_run-1_T1w.csv

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IPCAS_5/sub-0027291/ses-1/mri/mori_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/mwp1sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/mwp2sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/mwp3sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/neuromorphometrics_sub-0027291_ses-1_run-1_T1w.csv

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IPCAS_5/sub-0027291/ses-1/mri/neuromorphometrics_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/p0sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/p1sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/p2sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/p3sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/rp1sub-0027291_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/rp2sub-0027291_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/rp3sub-0027291_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/t_sub-0027291_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_5/sub-0027291/ses-1/mri/t_sub-0027291_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_5/sub-0027291/ses-1/mri/thalamus_sub-0027291_ses-1_run-1_T1w.csv

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IPCAS_5/sub-0027291/ses-1/mri/thalamus_sub-0027291_ses-1_run-1_T1w.nii.gz

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IPCAS_5/sub-0027291/ses-1/mri/wj_sub-0027291_ses-1_run-1_T1w.nii.gz

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