[DATALAD RUNCMD] Compute XHCUMS/sub-0026003/ses-4

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0026003/ses-4/anat/sub-0026003_ses-4_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0026003/ses-4"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0026003/ses-4/label/catROI_sub-0026003_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/0G/MD5E-s61370--be7b646b9b84b619df7712235231fee2.mat/MD5E-s61370--be7b646b9b84b619df7712235231fee2.mat

XHCUMS/sub-0026003/ses-4/label/catROI_sub-0026003_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/zV/MD5E-s189141--86d98f093ee27453dcc374da7db6fe44.xml/MD5E-s189141--86d98f093ee27453dcc374da7db6fe44.xml

XHCUMS/sub-0026003/ses-4/label/catROIs_sub-0026003_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/zM/MD5E-s120108--49d0e271ad62a8226b40ff4dec85a5f8.mat/MD5E-s120108--49d0e271ad62a8226b40ff4dec85a5f8.mat

XHCUMS/sub-0026003/ses-4/label/catROIs_sub-0026003_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fv/f5/MD5E-s332246--07ba196c5ae5105843f33c4d6868829a.xml/MD5E-s332246--07ba196c5ae5105843f33c4d6868829a.xml

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/M0/MD5E-s163028--c79e95001609b9e3e9b63f72da4ee608.nii.gz/MD5E-s163028--c79e95001609b9e3e9b63f72da4ee608.nii.gz

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/49/MD5E-s182267--70978ee839478c68e9eef81357372f5b.nii.gz/MD5E-s182267--70978ee839478c68e9eef81357372f5b.nii.gz

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/JM/MD5E-s248117--dbb28807e8d5e149f962dc4ab48d2cbe.nii.gz/MD5E-s248117--dbb28807e8d5e149f962dc4ab48d2cbe.nii.gz

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0026003/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/gG/MD5E-s274354--e0f2dbf559df19170689ac6327276d60.nii.gz/MD5E-s274354--e0f2dbf559df19170689ac6327276d60.nii.gz

XHCUMS/sub-0026003/ses-4/mri/Tian_Subcortex_S2_7T_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0026003/ses-4/mri/Tian_Subcortex_S2_7T_sub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/Kv/MD5E-s24224--4bf055e005b91bc2fad42540eed416f1.nii.gz/MD5E-s24224--4bf055e005b91bc2fad42540eed416f1.nii.gz

XHCUMS/sub-0026003/ses-4/mri/aal3_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0026003/ses-4/mri/aal3_sub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0026003/ses-4/mri/anatomy3_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0026003/ses-4/mri/anatomy3_sub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/73/MD5E-s134213--655fd1488a66acfa76c54afbb94a9d23.nii.gz/MD5E-s134213--655fd1488a66acfa76c54afbb94a9d23.nii.gz

XHCUMS/sub-0026003/ses-4/mri/anon_misub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gp/vX/MD5E-s9241628--cfec379a508af10e428540a25f81053c.nii.gz/MD5E-s9241628--cfec379a508af10e428540a25f81053c.nii.gz

XHCUMS/sub-0026003/ses-4/mri/anon_msub-0026003_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/j1/MD5E-s10026723--9a259a4e6a2b33387e3f347d4b2dc8ad.nii.gz/MD5E-s10026723--9a259a4e6a2b33387e3f347d4b2dc8ad.nii.gz

XHCUMS/sub-0026003/ses-4/mri/cat_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/cobra_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

XHCUMS/sub-0026003/ses-4/mri/cobra_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/hammers_sub-0026003_ses-4_run-1_T1w.csv

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XHCUMS/sub-0026003/ses-4/mri/hammers_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/ibsr_sub-0026003_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0026003/ses-4/mri/ibsr_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/it_sub-0026003_ses-4_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/Zx/MD5E-s283--a6ada38f4fc14c6d9631b7798fffe4c9.mat/MD5E-s283--a6ada38f4fc14c6d9631b7798fffe4c9.mat

XHCUMS/sub-0026003/ses-4/mri/it_sub-0026003_ses-4_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/5k/pP/MD5E-s284--0a774735e50d2b3bda765b1c71c7e8f9.mat/MD5E-s284--0a774735e50d2b3bda765b1c71c7e8f9.mat

XHCUMS/sub-0026003/ses-4/mri/iy_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/julichbrain_sub-0026003_ses-4_run-1_T1w.csv

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XHCUMS/sub-0026003/ses-4/mri/julichbrain_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/lpba40_sub-0026003_ses-4_run-1_T1w.csv

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XHCUMS/sub-0026003/ses-4/mri/lpba40_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/m0wp1sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/m0wp2sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/m0wp3sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/mori_sub-0026003_ses-4_run-1_T1w.csv

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XHCUMS/sub-0026003/ses-4/mri/mori_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/mwp1sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/mwp2sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/mwp3sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/neuromorphometrics_sub-0026003_ses-4_run-1_T1w.csv

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XHCUMS/sub-0026003/ses-4/mri/neuromorphometrics_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/p0sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/p1sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/p2sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/p3sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/rp1sub-0026003_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/rp2sub-0026003_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/rp3sub-0026003_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/t_sub-0026003_ses-4_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0026003/ses-4/mri/t_sub-0026003_ses-4_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0026003/ses-4/mri/thalamus_sub-0026003_ses-4_run-1_T1w.csv

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XHCUMS/sub-0026003/ses-4/mri/thalamus_sub-0026003_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0026003/ses-4/mri/wj_sub-0026003_ses-4_run-1_T1w.nii.gz

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