[DATALAD RUNCMD] Compute SWU_4/sub-0025654/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025654/ses-1/anat/sub-0025654_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025654/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025654/ses-1/label/catROI_sub-0025654_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/9f/MD5E-s57775--7736c1ed1c7c4f63120d0760b0ce002e.mat/MD5E-s57775--7736c1ed1c7c4f63120d0760b0ce002e.mat

SWU_4/sub-0025654/ses-1/label/catROI_sub-0025654_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/qz/MD5E-s188539--abc49de63f69e422616b3907d9afeba0.xml/MD5E-s188539--abc49de63f69e422616b3907d9afeba0.xml

SWU_4/sub-0025654/ses-1/label/catROIs_sub-0025654_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/w7/MD5E-s120162--a2d02448d322dad236b07cc80548ea3c.mat/MD5E-s120162--a2d02448d322dad236b07cc80548ea3c.mat

SWU_4/sub-0025654/ses-1/label/catROIs_sub-0025654_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/05/MD5E-s332071--cadc8508a1198faf96d31e0a12ba3779.xml/MD5E-s332071--cadc8508a1198faf96d31e0a12ba3779.xml

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/Gj/MD5E-s168957--d808d54c9462411871f829dea7d93138.nii.gz/MD5E-s168957--d808d54c9462411871f829dea7d93138.nii.gz

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/Vx/MD5E-s187756--33f8331499ff908c729b38860529e4c6.nii.gz/MD5E-s187756--33f8331499ff908c729b38860529e4c6.nii.gz

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xq/9J/MD5E-s254764--ce1290ecc79db367da50570a36693ab0.nii.gz/MD5E-s254764--ce1290ecc79db367da50570a36693ab0.nii.gz

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025654/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/34/MD5E-s281826--ceaf8b64f6ae50da529545830e8df670.nii.gz/MD5E-s281826--ceaf8b64f6ae50da529545830e8df670.nii.gz

SWU_4/sub-0025654/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025654/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/v7/MD5E-s25769--4467420c8f872a986e1a968b9255761f.nii.gz/MD5E-s25769--4467420c8f872a986e1a968b9255761f.nii.gz

SWU_4/sub-0025654/ses-1/mri/aal3_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025654/ses-1/mri/aal3_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/6F/MD5E-s189806--d6102f458346b1277b0625c6a7aeb567.nii.gz/MD5E-s189806--d6102f458346b1277b0625c6a7aeb567.nii.gz

SWU_4/sub-0025654/ses-1/mri/anatomy3_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025654/ses-1/mri/anatomy3_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/45/MD5E-s137107--94d1c1163e50acf9f9c07185ad6aca2a.nii.gz/MD5E-s137107--94d1c1163e50acf9f9c07185ad6aca2a.nii.gz

SWU_4/sub-0025654/ses-1/mri/anon_misub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/1g/MD5E-s9718025--41ec441c88ebbd035b6f05ac8f3b2dca.nii.gz/MD5E-s9718025--41ec441c88ebbd035b6f05ac8f3b2dca.nii.gz

SWU_4/sub-0025654/ses-1/mri/anon_msub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/5M/MD5E-s11275200--d382f5678929d1c0a5a0215f227ca21d.nii.gz/MD5E-s11275200--d382f5678929d1c0a5a0215f227ca21d.nii.gz

SWU_4/sub-0025654/ses-1/mri/cat_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/qz/MD5E-s100811--3c4f69dc2deaccf48719d12198a548f2.nii.gz/MD5E-s100811--3c4f69dc2deaccf48719d12198a548f2.nii.gz

SWU_4/sub-0025654/ses-1/mri/cobra_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025654/ses-1/mri/cobra_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/kZ/MD5E-s48910--475d55aa7e2c4ac11cdfe71ed316f625.nii.gz/MD5E-s48910--475d55aa7e2c4ac11cdfe71ed316f625.nii.gz

SWU_4/sub-0025654/ses-1/mri/hammers_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025654/ses-1/mri/hammers_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/vv/MD5E-s148771--cf647d4c47307d277b553365513604e6.nii.gz/MD5E-s148771--cf647d4c47307d277b553365513604e6.nii.gz

SWU_4/sub-0025654/ses-1/mri/ibsr_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025654/ses-1/mri/ibsr_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/gx/MD5E-s157998--183277614a85e70a0f0f67f58ab8508c.nii.gz/MD5E-s157998--183277614a85e70a0f0f67f58ab8508c.nii.gz

SWU_4/sub-0025654/ses-1/mri/it_sub-0025654_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/gV/MD5E-s282--a794ee1be1b310b5349c767397407123.mat/MD5E-s282--a794ee1be1b310b5349c767397407123.mat

SWU_4/sub-0025654/ses-1/mri/it_sub-0025654_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/zz/MD5E-s282--0a549c07fdd211138d88746feead76d9.mat/MD5E-s282--0a549c07fdd211138d88746feead76d9.mat

SWU_4/sub-0025654/ses-1/mri/iy_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/5g/MD5E-s48978070--a7024b543c3953ef178b0cfb5d25cef0.nii.gz/MD5E-s48978070--a7024b543c3953ef178b0cfb5d25cef0.nii.gz

SWU_4/sub-0025654/ses-1/mri/julichbrain_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025654/ses-1/mri/julichbrain_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/Xf/MD5E-s201665--d942bb6dfce9f24a5a5cb59cc02e27bf.nii.gz/MD5E-s201665--d942bb6dfce9f24a5a5cb59cc02e27bf.nii.gz

SWU_4/sub-0025654/ses-1/mri/lpba40_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025654/ses-1/mri/lpba40_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/wF/MD5E-s144893--1bb29392d542dd1eb6f4ce1ab092d2ce.nii.gz/MD5E-s144893--1bb29392d542dd1eb6f4ce1ab092d2ce.nii.gz

SWU_4/sub-0025654/ses-1/mri/m0wp1sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/K5/MD5E-s2568544--0c49046359ce4e2cf11b9dc9de78565a.nii.gz/MD5E-s2568544--0c49046359ce4e2cf11b9dc9de78565a.nii.gz

SWU_4/sub-0025654/ses-1/mri/m0wp2sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/FX/MD5E-s2300285--13b76be905947b03fa6d5ea20813b37e.nii.gz/MD5E-s2300285--13b76be905947b03fa6d5ea20813b37e.nii.gz

SWU_4/sub-0025654/ses-1/mri/m0wp3sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/5q/MD5E-s2422720--b6097818ecf8fabde997beceb7c294f1.nii.gz/MD5E-s2422720--b6097818ecf8fabde997beceb7c294f1.nii.gz

SWU_4/sub-0025654/ses-1/mri/mori_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025654/ses-1/mri/mori_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025654/ses-1/mri/mwp1sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/9J/MD5E-s2569589--b41b19bf00e77cdfd83d6cfa61476eb4.nii.gz/MD5E-s2569589--b41b19bf00e77cdfd83d6cfa61476eb4.nii.gz

SWU_4/sub-0025654/ses-1/mri/mwp2sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/kM/MD5E-s2294742--15e32c0a3f57afbc37331e30215fbac9.nii.gz/MD5E-s2294742--15e32c0a3f57afbc37331e30215fbac9.nii.gz

SWU_4/sub-0025654/ses-1/mri/mwp3sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3z/03/MD5E-s2419457--1ae5eff1ae4332c90089e1597c236513.nii.gz/MD5E-s2419457--1ae5eff1ae4332c90089e1597c236513.nii.gz

SWU_4/sub-0025654/ses-1/mri/neuromorphometrics_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025654/ses-1/mri/neuromorphometrics_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/6m/MD5E-s202823--383d26d0bb84cdc779b0a9dd48318cd9.nii.gz/MD5E-s202823--383d26d0bb84cdc779b0a9dd48318cd9.nii.gz

SWU_4/sub-0025654/ses-1/mri/p0sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025654/ses-1/mri/p1sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xf/Z5/MD5E-s665897--4ce02bce369d26f6b926ef57f604a841.nii.gz/MD5E-s665897--4ce02bce369d26f6b926ef57f604a841.nii.gz

SWU_4/sub-0025654/ses-1/mri/p2sub-0025654_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025654/ses-1/mri/p3sub-0025654_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025654/ses-1/mri/rp1sub-0025654_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025654/ses-1/mri/rp2sub-0025654_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025654/ses-1/mri/rp3sub-0025654_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025654/ses-1/mri/t_sub-0025654_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025654/ses-1/mri/t_sub-0025654_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025654/ses-1/mri/thalamus_sub-0025654_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025654/ses-1/mri/thalamus_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025654/ses-1/mri/wj_sub-0025654_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/j1/MD5E-s5542265--786dcf577c420cd3de39c7d0f0b29090.nii.gz/MD5E-s5542265--786dcf577c420cd3de39c7d0f0b29090.nii.gz

SWU_4/sub-0025654/ses-1/mri/wmisub-0025654_ses-1_run-1_T1w.nii.gz

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