[DATALAD RUNCMD] Compute SWU_4/sub-0025718/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025718/ses-2/anat/sub-0025718_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025718/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025718/ses-2/label/catROI_sub-0025718_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/76/MD5E-s61245--b081d3bc99ff843c7553712e177e392a.mat/MD5E-s61245--b081d3bc99ff843c7553712e177e392a.mat

SWU_4/sub-0025718/ses-2/label/catROI_sub-0025718_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/xq/MD5E-s188661--7d05eab4a0cadfad5a088ceaebef9b0a.xml/MD5E-s188661--7d05eab4a0cadfad5a088ceaebef9b0a.xml

SWU_4/sub-0025718/ses-2/label/catROIs_sub-0025718_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/k8/MD5E-s120083--f11120d8ed4da9320f9980fda3a3bd5e.mat/MD5E-s120083--f11120d8ed4da9320f9980fda3a3bd5e.mat

SWU_4/sub-0025718/ses-2/label/catROIs_sub-0025718_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/3f/MD5E-s332200--e8d2c22e812cbc0ab874cc05bd9366e8.xml/MD5E-s332200--e8d2c22e812cbc0ab874cc05bd9366e8.xml

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/09/MD5E-s177165--a2ebd325305fb7c5968258b3282840ba.nii.gz/MD5E-s177165--a2ebd325305fb7c5968258b3282840ba.nii.gz

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MQ/27/MD5E-s197627--f711599e6f58a83ab5014d1ffa169aa9.nii.gz/MD5E-s197627--f711599e6f58a83ab5014d1ffa169aa9.nii.gz

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/vG/MD5E-s266119--a03ba3be6450ac0b97a06ca7d4138f5c.nii.gz/MD5E-s266119--a03ba3be6450ac0b97a06ca7d4138f5c.nii.gz

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025718/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/1q/MD5E-s295200--d113b8b35c11ccbb9a3d7a28a517e8a2.nii.gz/MD5E-s295200--d113b8b35c11ccbb9a3d7a28a517e8a2.nii.gz

SWU_4/sub-0025718/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025718/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/3G/MD5E-s26098--5ed8ca395b9573a18ea14b41d2dbbd46.nii.gz/MD5E-s26098--5ed8ca395b9573a18ea14b41d2dbbd46.nii.gz

SWU_4/sub-0025718/ses-2/mri/aal3_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025718/ses-2/mri/aal3_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/9g/MD5E-s200021--f9ffe4f9fe33392d147d2100d135e98a.nii.gz/MD5E-s200021--f9ffe4f9fe33392d147d2100d135e98a.nii.gz

SWU_4/sub-0025718/ses-2/mri/anatomy3_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025718/ses-2/mri/anatomy3_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/P7/MD5E-s144572--4d15cdabe4efd90aed4a2d8f4211c64b.nii.gz/MD5E-s144572--4d15cdabe4efd90aed4a2d8f4211c64b.nii.gz

SWU_4/sub-0025718/ses-2/mri/anon_misub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/X6/MD5E-s9899434--0d271e7782c09198def35fb76b7c079b.nii.gz/MD5E-s9899434--0d271e7782c09198def35fb76b7c079b.nii.gz

SWU_4/sub-0025718/ses-2/mri/anon_msub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/pK/MD5E-s11284962--cfc766fb84f896e8222b3c3cf4911b88.nii.gz/MD5E-s11284962--cfc766fb84f896e8222b3c3cf4911b88.nii.gz

SWU_4/sub-0025718/ses-2/mri/cat_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/m2/MD5E-s108812--38d6646c93b32f76827b5248c48f7bd3.nii.gz/MD5E-s108812--38d6646c93b32f76827b5248c48f7bd3.nii.gz

SWU_4/sub-0025718/ses-2/mri/cobra_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025718/ses-2/mri/cobra_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/pG/MD5E-s50878--c4e74de790ac8ec159c50ecce28f34ce.nii.gz/MD5E-s50878--c4e74de790ac8ec159c50ecce28f34ce.nii.gz

SWU_4/sub-0025718/ses-2/mri/hammers_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025718/ses-2/mri/hammers_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/QV/MD5E-s159055--647f89054cd63e34f17e1e11032614c2.nii.gz/MD5E-s159055--647f89054cd63e34f17e1e11032614c2.nii.gz

SWU_4/sub-0025718/ses-2/mri/ibsr_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025718/ses-2/mri/ibsr_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/gz/MD5E-s166092--45fbf1f8569fe989509baf86ffef3803.nii.gz/MD5E-s166092--45fbf1f8569fe989509baf86ffef3803.nii.gz

SWU_4/sub-0025718/ses-2/mri/it_sub-0025718_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/Jj/MD5E-s283--fb6a72ef92f4b5fc79b38443f0e70d56.mat/MD5E-s283--fb6a72ef92f4b5fc79b38443f0e70d56.mat

SWU_4/sub-0025718/ses-2/mri/it_sub-0025718_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/44/MD5E-s283--76473c7d1d5e816cfdcd4ee98dd604e0.mat/MD5E-s283--76473c7d1d5e816cfdcd4ee98dd604e0.mat

SWU_4/sub-0025718/ses-2/mri/iy_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2F/24/MD5E-s50594199--c3439863ebb5596a6cf9faa550c78fd9.nii.gz/MD5E-s50594199--c3439863ebb5596a6cf9faa550c78fd9.nii.gz

SWU_4/sub-0025718/ses-2/mri/julichbrain_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025718/ses-2/mri/julichbrain_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/fJ/MD5E-s212868--e540b697643666ca126ee9ccff2e9b17.nii.gz/MD5E-s212868--e540b697643666ca126ee9ccff2e9b17.nii.gz

SWU_4/sub-0025718/ses-2/mri/lpba40_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025718/ses-2/mri/lpba40_sub-0025718_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025718/ses-2/mri/m0wp1sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/mZ/MD5E-s2582159--9aa3d914f0bcfc6e481cfcb9594e2e5a.nii.gz/MD5E-s2582159--9aa3d914f0bcfc6e481cfcb9594e2e5a.nii.gz

SWU_4/sub-0025718/ses-2/mri/m0wp2sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/pq/MD5E-s2317804--f88b790669ac75223ae8e2a375c8aea8.nii.gz/MD5E-s2317804--f88b790669ac75223ae8e2a375c8aea8.nii.gz

SWU_4/sub-0025718/ses-2/mri/m0wp3sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/v6/MD5E-s2644436--2f763ed9c26fc01c774e89aad79818bd.nii.gz/MD5E-s2644436--2f763ed9c26fc01c774e89aad79818bd.nii.gz

SWU_4/sub-0025718/ses-2/mri/mori_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025718/ses-2/mri/mori_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/zf/MD5E-s185028--768e73407392c0a51cf413cdd91ce4f3.nii.gz/MD5E-s185028--768e73407392c0a51cf413cdd91ce4f3.nii.gz

SWU_4/sub-0025718/ses-2/mri/mwp1sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025718/ses-2/mri/mwp2sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025718/ses-2/mri/mwp3sub-0025718_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025718/ses-2/mri/neuromorphometrics_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025718/ses-2/mri/neuromorphometrics_sub-0025718_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025718/ses-2/mri/p0sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/9f/MD5E-s711204--a373265b9a09eb3806d01941e2b918ac.nii.gz/MD5E-s711204--a373265b9a09eb3806d01941e2b918ac.nii.gz

SWU_4/sub-0025718/ses-2/mri/p1sub-0025718_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025718/ses-2/mri/p2sub-0025718_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025718/ses-2/mri/p3sub-0025718_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025718/ses-2/mri/rp1sub-0025718_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025718/ses-2/mri/rp2sub-0025718_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025718/ses-2/mri/rp3sub-0025718_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025718/ses-2/mri/t_sub-0025718_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025718/ses-2/mri/t_sub-0025718_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025718/ses-2/mri/thalamus_sub-0025718_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025718/ses-2/mri/thalamus_sub-0025718_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025718/ses-2/mri/wj_sub-0025718_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025718/ses-2/surf/lh.edgemap32k.sub-0025718_ses-2_run-1_T1w.mat

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