[DATALAD RUNCMD] Compute IACAS/sub-0025462/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025462/ses-2/anat/sub-0025462_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025462/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025462/ses-2/label/catROI_sub-0025462_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/99/MD5E-s58193--69bb993346f5da759ee99172a8d869cb.mat/MD5E-s58193--69bb993346f5da759ee99172a8d869cb.mat

IACAS/sub-0025462/ses-2/label/catROI_sub-0025462_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/g6/MD5E-s188500--38e34df189621eee4ccebe6a5242ee8b.xml/MD5E-s188500--38e34df189621eee4ccebe6a5242ee8b.xml

IACAS/sub-0025462/ses-2/label/catROIs_sub-0025462_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/77/MD5E-s120185--91d1389819be3785e207e0b595d0418c.mat/MD5E-s120185--91d1389819be3785e207e0b595d0418c.mat

IACAS/sub-0025462/ses-2/label/catROIs_sub-0025462_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/w2/MD5E-s332085--5f3e496d171748a7a81c2c17ef70b3a4.xml/MD5E-s332085--5f3e496d171748a7a81c2c17ef70b3a4.xml

IACAS/sub-0025462/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025462/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/Z1/MD5E-s187724--3f68068b6092383a69af026a220f2235.nii.gz/MD5E-s187724--3f68068b6092383a69af026a220f2235.nii.gz

IACAS/sub-0025462/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025462/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/mp/MD5E-s211403--7be80e7a97a7f8899f687701313b76f4.nii.gz/MD5E-s211403--7be80e7a97a7f8899f687701313b76f4.nii.gz

IACAS/sub-0025462/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025462/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/g2/MD5E-s282122--947f756e80dd6a643ad6e3c4b38acdb6.nii.gz/MD5E-s282122--947f756e80dd6a643ad6e3c4b38acdb6.nii.gz

IACAS/sub-0025462/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025462/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/3p/MD5E-s313051--1afdee030d7ab1f97f587dd92e8ad28d.nii.gz/MD5E-s313051--1afdee030d7ab1f97f587dd92e8ad28d.nii.gz

IACAS/sub-0025462/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025462/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/XK/MD5E-s27600--1c2b368b76eaae37ccb51de612a13a5b.nii.gz/MD5E-s27600--1c2b368b76eaae37ccb51de612a13a5b.nii.gz

IACAS/sub-0025462/ses-2/mri/aal3_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025462/ses-2/mri/aal3_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/Kj/MD5E-s211782--50c2eef60212cdbab30d6317505c6172.nii.gz/MD5E-s211782--50c2eef60212cdbab30d6317505c6172.nii.gz

IACAS/sub-0025462/ses-2/mri/anatomy3_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IACAS/sub-0025462/ses-2/mri/anatomy3_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/k3/MD5E-s155643--b8a50bd2dd77a98126214e6e81644770.nii.gz/MD5E-s155643--b8a50bd2dd77a98126214e6e81644770.nii.gz

IACAS/sub-0025462/ses-2/mri/anon_misub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/vX/MD5E-s9876390--d086154b02a6c8fccb521b170f600cbd.nii.gz/MD5E-s9876390--d086154b02a6c8fccb521b170f600cbd.nii.gz

IACAS/sub-0025462/ses-2/mri/anon_msub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/27/MD5E-s11078172--3c14d5f0179e68cf02fd113a6dff9472.nii.gz/MD5E-s11078172--3c14d5f0179e68cf02fd113a6dff9472.nii.gz

IACAS/sub-0025462/ses-2/mri/cat_sub-0025462_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025462/ses-2/mri/cobra_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025462/ses-2/mri/cobra_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/hammers_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025462/ses-2/mri/hammers_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/ibsr_sub-0025462_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025462/ses-2/mri/ibsr_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/it_sub-0025462_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/jW/MD5E-s284--a0cc2a9728534b30222c002a8475f85f.mat/MD5E-s284--a0cc2a9728534b30222c002a8475f85f.mat

IACAS/sub-0025462/ses-2/mri/it_sub-0025462_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G0/PJ/MD5E-s283--c06a4b2454992fe094ac374ec7dfa3de.mat/MD5E-s283--c06a4b2454992fe094ac374ec7dfa3de.mat

IACAS/sub-0025462/ses-2/mri/iy_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/julichbrain_sub-0025462_ses-2_run-1_T1w.csv

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IACAS/sub-0025462/ses-2/mri/julichbrain_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/lpba40_sub-0025462_ses-2_run-1_T1w.csv

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IACAS/sub-0025462/ses-2/mri/lpba40_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/m0wp1sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/m0wp2sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/m0wp3sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/mori_sub-0025462_ses-2_run-1_T1w.csv

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IACAS/sub-0025462/ses-2/mri/mori_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/mwp1sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/mwp2sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/mwp3sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/neuromorphometrics_sub-0025462_ses-2_run-1_T1w.csv

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IACAS/sub-0025462/ses-2/mri/neuromorphometrics_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/p0sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/p1sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/p2sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/p3sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/rp1sub-0025462_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025462/ses-2/mri/rp2sub-0025462_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025462/ses-2/mri/rp3sub-0025462_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025462/ses-2/mri/t_sub-0025462_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025462/ses-2/mri/t_sub-0025462_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025462/ses-2/mri/thalamus_sub-0025462_ses-2_run-1_T1w.csv

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IACAS/sub-0025462/ses-2/mri/thalamus_sub-0025462_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025462/ses-2/mri/wj_sub-0025462_ses-2_run-1_T1w.nii.gz

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