[DATALAD RUNCMD] Compute HNU_1/sub-0025435/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025435/ses-2/anat/sub-0025435_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025435/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025435/ses-2/label/catROI_sub-0025435_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/fF/MD5E-s61313--36c0357556b8bd495ba61aeb6354678a.mat/MD5E-s61313--36c0357556b8bd495ba61aeb6354678a.mat

HNU_1/sub-0025435/ses-2/label/catROI_sub-0025435_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V1/13/MD5E-s189187--6963e723701d93ea5fa9aaa8415b3e04.xml/MD5E-s189187--6963e723701d93ea5fa9aaa8415b3e04.xml

HNU_1/sub-0025435/ses-2/label/catROIs_sub-0025435_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/XZ/MD5E-s120075--614c071671378facdf506c2788a1b7fb.mat/MD5E-s120075--614c071671378facdf506c2788a1b7fb.mat

HNU_1/sub-0025435/ses-2/label/catROIs_sub-0025435_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/gf/MD5E-s332102--3cf35e79f4d584d0d62b09cc2d89f23f.xml/MD5E-s332102--3cf35e79f4d584d0d62b09cc2d89f23f.xml

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/89/wk/MD5E-s163361--d2dfa4c4e58fdcf7b88bc0492b35ea09.nii.gz/MD5E-s163361--d2dfa4c4e58fdcf7b88bc0492b35ea09.nii.gz

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q8/kW/MD5E-s182117--c44d6ec479966911dff54d655c12f331.nii.gz/MD5E-s182117--c44d6ec479966911dff54d655c12f331.nii.gz

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/qX/MD5E-s247714--a84ba5240ce820d1d6ca82a11efa125e.nii.gz/MD5E-s247714--a84ba5240ce820d1d6ca82a11efa125e.nii.gz

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025435/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/13/MD5E-s274647--cfa6dac8327e20b02084de45069e2679.nii.gz/MD5E-s274647--cfa6dac8327e20b02084de45069e2679.nii.gz

HNU_1/sub-0025435/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025435/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/1x/MD5E-s24697--201e67b4afe7c35645316f141952bba3.nii.gz/MD5E-s24697--201e67b4afe7c35645316f141952bba3.nii.gz

HNU_1/sub-0025435/ses-2/mri/aal3_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025435/ses-2/mri/aal3_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/WJ/MD5E-s182570--fd330bf2347fcc12f8b8e9ea043cafec.nii.gz/MD5E-s182570--fd330bf2347fcc12f8b8e9ea043cafec.nii.gz

HNU_1/sub-0025435/ses-2/mri/anatomy3_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025435/ses-2/mri/anatomy3_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/2P/MD5E-s133854--d0b02d5fc6af05c2ffaf0d5db79efa08.nii.gz/MD5E-s133854--d0b02d5fc6af05c2ffaf0d5db79efa08.nii.gz

HNU_1/sub-0025435/ses-2/mri/anon_misub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/vw/MD5E-s4793549--cfa765d147bba4a99d7a2826322d4872.nii.gz/MD5E-s4793549--cfa765d147bba4a99d7a2826322d4872.nii.gz

HNU_1/sub-0025435/ses-2/mri/anon_msub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/wp/MD5E-s9838448--955f15adbf4ef764e595e1f2be25a289.nii.gz/MD5E-s9838448--955f15adbf4ef764e595e1f2be25a289.nii.gz

HNU_1/sub-0025435/ses-2/mri/cat_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/3x/MD5E-s101190--4d2fc6808a519b78b223ae3385b05995.nii.gz/MD5E-s101190--4d2fc6808a519b78b223ae3385b05995.nii.gz

HNU_1/sub-0025435/ses-2/mri/cobra_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025435/ses-2/mri/cobra_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/ww/MD5E-s47937--997eca9e941b752997cba2b9d015ca28.nii.gz/MD5E-s47937--997eca9e941b752997cba2b9d015ca28.nii.gz

HNU_1/sub-0025435/ses-2/mri/hammers_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025435/ses-2/mri/hammers_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4k/XW/MD5E-s146748--97f414d31c0893db7bf28af55adf535a.nii.gz/MD5E-s146748--97f414d31c0893db7bf28af55adf535a.nii.gz

HNU_1/sub-0025435/ses-2/mri/ibsr_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025435/ses-2/mri/ibsr_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5K/z7/MD5E-s152157--8be93917d6fbb4c55b419650fbd20294.nii.gz/MD5E-s152157--8be93917d6fbb4c55b419650fbd20294.nii.gz

HNU_1/sub-0025435/ses-2/mri/it_sub-0025435_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/j5/MD5E-s283--d1eb8b23054c8c71482da501f922a0d2.mat/MD5E-s283--d1eb8b23054c8c71482da501f922a0d2.mat

HNU_1/sub-0025435/ses-2/mri/it_sub-0025435_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/xf/MD5E-s281--4efa894192f65c18b34c211488f74a43.mat/MD5E-s281--4efa894192f65c18b34c211488f74a43.mat

HNU_1/sub-0025435/ses-2/mri/iy_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/40/MD5E-s43515636--8e770f4e546b6dca90b49d83fa6160e9.nii.gz/MD5E-s43515636--8e770f4e546b6dca90b49d83fa6160e9.nii.gz

HNU_1/sub-0025435/ses-2/mri/julichbrain_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025435/ses-2/mri/julichbrain_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/jK/MD5E-s196804--bafe4c5d9fa9d49508ff5b4726fb1f75.nii.gz/MD5E-s196804--bafe4c5d9fa9d49508ff5b4726fb1f75.nii.gz

HNU_1/sub-0025435/ses-2/mri/lpba40_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025435/ses-2/mri/lpba40_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/Mj/MD5E-s142893--f9687c3a65bd707f92cc550098ddbcd0.nii.gz/MD5E-s142893--f9687c3a65bd707f92cc550098ddbcd0.nii.gz

HNU_1/sub-0025435/ses-2/mri/m0wp1sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/Pz/MD5E-s2585011--01acaaa8eac878719673ff8e50314e0f.nii.gz/MD5E-s2585011--01acaaa8eac878719673ff8e50314e0f.nii.gz

HNU_1/sub-0025435/ses-2/mri/m0wp2sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/mG/MD5E-s2381232--95eb365477accabc1ca8d131adbcd63b.nii.gz/MD5E-s2381232--95eb365477accabc1ca8d131adbcd63b.nii.gz

HNU_1/sub-0025435/ses-2/mri/m0wp3sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/xm/MD5E-s2654655--a9ad4a4b1da384aa4076b474a50b7706.nii.gz/MD5E-s2654655--a9ad4a4b1da384aa4076b474a50b7706.nii.gz

HNU_1/sub-0025435/ses-2/mri/mori_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025435/ses-2/mri/mori_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/55/MD5E-s170431--9908c987dbdfcb4af3d7037435509c41.nii.gz/MD5E-s170431--9908c987dbdfcb4af3d7037435509c41.nii.gz

HNU_1/sub-0025435/ses-2/mri/mwp1sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/21/MD5E-s2595619--75bccf0e04bedfdb1a32d327ce6280b1.nii.gz/MD5E-s2595619--75bccf0e04bedfdb1a32d327ce6280b1.nii.gz

HNU_1/sub-0025435/ses-2/mri/mwp2sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/z9/MD5E-s2380136--7e8d7ec858fa37bea5959bb81ad29ba0.nii.gz/MD5E-s2380136--7e8d7ec858fa37bea5959bb81ad29ba0.nii.gz

HNU_1/sub-0025435/ses-2/mri/mwp3sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/P6/MD5E-s2655673--374c19fa2d24e42a1ed4de1194e74d41.nii.gz/MD5E-s2655673--374c19fa2d24e42a1ed4de1194e74d41.nii.gz

HNU_1/sub-0025435/ses-2/mri/neuromorphometrics_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025435/ses-2/mri/neuromorphometrics_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/70/MD5E-s197233--60bbff7d19006d87295f0d7a06978882.nii.gz/MD5E-s197233--60bbff7d19006d87295f0d7a06978882.nii.gz

HNU_1/sub-0025435/ses-2/mri/p0sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9g/ZJ/MD5E-s640695--898865df247ba77d3d97d995aa5ba5e6.nii.gz/MD5E-s640695--898865df247ba77d3d97d995aa5ba5e6.nii.gz

HNU_1/sub-0025435/ses-2/mri/p1sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/z5/MD5E-s673840--2051b4ddeb77c8ed3fcbb199d3c6ec97.nii.gz/MD5E-s673840--2051b4ddeb77c8ed3fcbb199d3c6ec97.nii.gz

HNU_1/sub-0025435/ses-2/mri/p2sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/0Z/MD5E-s425791--4de5b9ef7ec1e0231d7f518b60dce3bb.nii.gz/MD5E-s425791--4de5b9ef7ec1e0231d7f518b60dce3bb.nii.gz

HNU_1/sub-0025435/ses-2/mri/p3sub-0025435_ses-2_run-1_T1w.nii.gz

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HNU_1/sub-0025435/ses-2/mri/rp1sub-0025435_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025435/ses-2/mri/rp2sub-0025435_ses-2_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025435/ses-2/mri/rp3sub-0025435_ses-2_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025435/ses-2/mri/t_sub-0025435_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/gM/MD5E-s282--ecea83ffcffc075cc15d62d4ce6f21f1.mat/MD5E-s282--ecea83ffcffc075cc15d62d4ce6f21f1.mat

HNU_1/sub-0025435/ses-2/mri/t_sub-0025435_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/X3/MD5E-s282--2fc347bca445d4182ba6b59df19e17ca.mat/MD5E-s282--2fc347bca445d4182ba6b59df19e17ca.mat

HNU_1/sub-0025435/ses-2/mri/thalamus_sub-0025435_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

HNU_1/sub-0025435/ses-2/mri/thalamus_sub-0025435_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025435/ses-2/mri/wj_sub-0025435_ses-2_run-1_T1w.nii.gz

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