[DATALAD RUNCMD] Compute SWU_4/sub-0025650/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025650/ses-1/anat/sub-0025650_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025650/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025650/ses-1/label/catROI_sub-0025650_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/P6/MD5E-s61366--68a9d98224087a86b39581af55fd8901.mat/MD5E-s61366--68a9d98224087a86b39581af55fd8901.mat

SWU_4/sub-0025650/ses-1/label/catROI_sub-0025650_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/ZK/MD5E-s188715--1e0bdb598e6bf3a97a1598bfd2d2289a.xml/MD5E-s188715--1e0bdb598e6bf3a97a1598bfd2d2289a.xml

SWU_4/sub-0025650/ses-1/label/catROIs_sub-0025650_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/1f/MD5E-s120091--8e3f7bc411b22f51d2042377b1eaaea8.mat/MD5E-s120091--8e3f7bc411b22f51d2042377b1eaaea8.mat

SWU_4/sub-0025650/ses-1/label/catROIs_sub-0025650_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/kw/MD5E-s332072--936744ebfa48fefab6e2fcba04aa8b02.xml/MD5E-s332072--936744ebfa48fefab6e2fcba04aa8b02.xml

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/4m/MD5E-s184209--b57c2f3f4ff0b90f00356d4972c51c6e.nii.gz/MD5E-s184209--b57c2f3f4ff0b90f00356d4972c51c6e.nii.gz

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jf/5W/MD5E-s206106--4a78e5902310480780033894024aa0c2.nii.gz/MD5E-s206106--4a78e5902310480780033894024aa0c2.nii.gz

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/XF/MD5E-s277602--110ed3cb90a984d3e11493ed52b1df12.nii.gz/MD5E-s277602--110ed3cb90a984d3e11493ed52b1df12.nii.gz

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025650/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/Kf/MD5E-s308150--0c540d5ed14a217557a783ceec853520.nii.gz/MD5E-s308150--0c540d5ed14a217557a783ceec853520.nii.gz

SWU_4/sub-0025650/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025650/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/ZQ/MD5E-s26659--7d3a75fa17bb14b5e7280138990e8c0d.nii.gz/MD5E-s26659--7d3a75fa17bb14b5e7280138990e8c0d.nii.gz

SWU_4/sub-0025650/ses-1/mri/aal3_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025650/ses-1/mri/aal3_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/9w/MD5E-s207375--69cfe2bedb2b721a92d532f03462f0a1.nii.gz/MD5E-s207375--69cfe2bedb2b721a92d532f03462f0a1.nii.gz

SWU_4/sub-0025650/ses-1/mri/anatomy3_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025650/ses-1/mri/anatomy3_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qk/p7/MD5E-s150110--5fe3258b62bfcb0bcfb525bd18371d2d.nii.gz/MD5E-s150110--5fe3258b62bfcb0bcfb525bd18371d2d.nii.gz

SWU_4/sub-0025650/ses-1/mri/anon_misub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/J5/MD5E-s9039671--7c3f56a0d1a3342ff3817ab5f012d5c8.nii.gz/MD5E-s9039671--7c3f56a0d1a3342ff3817ab5f012d5c8.nii.gz

SWU_4/sub-0025650/ses-1/mri/anon_msub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/PV/MD5E-s8745919--ac800448b7e8c67502f9170a78a2be82.nii.gz/MD5E-s8745919--ac800448b7e8c67502f9170a78a2be82.nii.gz

SWU_4/sub-0025650/ses-1/mri/cat_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pp/w0/MD5E-s114621--ab4a4be385a3edb0a9cdbadabbbeebda.nii.gz/MD5E-s114621--ab4a4be385a3edb0a9cdbadabbbeebda.nii.gz

SWU_4/sub-0025650/ses-1/mri/cobra_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025650/ses-1/mri/cobra_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/3q/MD5E-s50561--cfbbab12e49f747d169bde817884f01e.nii.gz/MD5E-s50561--cfbbab12e49f747d169bde817884f01e.nii.gz

SWU_4/sub-0025650/ses-1/mri/hammers_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025650/ses-1/mri/hammers_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/Zv/MD5E-s163426--9501720f78e5c1b3f37a73e041d22654.nii.gz/MD5E-s163426--9501720f78e5c1b3f37a73e041d22654.nii.gz

SWU_4/sub-0025650/ses-1/mri/ibsr_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025650/ses-1/mri/ibsr_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/25/MD5E-s170807--4d0bd97d3e0b5735febb60f18c37157a.nii.gz/MD5E-s170807--4d0bd97d3e0b5735febb60f18c37157a.nii.gz

SWU_4/sub-0025650/ses-1/mri/it_sub-0025650_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/41/MD5E-s283--311e07cadedad1de65fd9e0a8f36e171.mat/MD5E-s283--311e07cadedad1de65fd9e0a8f36e171.mat

SWU_4/sub-0025650/ses-1/mri/it_sub-0025650_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/25/MD5E-s284--0d253b0403165c916e8c18eaa4cd37e0.mat/MD5E-s284--0d253b0403165c916e8c18eaa4cd37e0.mat

SWU_4/sub-0025650/ses-1/mri/iy_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/78/MD5E-s52508765--c31ef1c4b7649ef48583af9b17b75ea3.nii.gz/MD5E-s52508765--c31ef1c4b7649ef48583af9b17b75ea3.nii.gz

SWU_4/sub-0025650/ses-1/mri/julichbrain_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025650/ses-1/mri/julichbrain_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/Xq/MD5E-s221384--c8e1db63359655ac4b79856c7e7f71ad.nii.gz/MD5E-s221384--c8e1db63359655ac4b79856c7e7f71ad.nii.gz

SWU_4/sub-0025650/ses-1/mri/lpba40_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025650/ses-1/mri/lpba40_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/1j/MD5E-s158967--6f9fb0061b995f2fb0a027d58151b73b.nii.gz/MD5E-s158967--6f9fb0061b995f2fb0a027d58151b73b.nii.gz

SWU_4/sub-0025650/ses-1/mri/m0wp1sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/6j/MD5E-s2582195--d85da8374bb9502f6a204d8b73a73b64.nii.gz/MD5E-s2582195--d85da8374bb9502f6a204d8b73a73b64.nii.gz

SWU_4/sub-0025650/ses-1/mri/m0wp2sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/51/MD5E-s2362731--b9d67638672540f5e65a2dff46cda1f0.nii.gz/MD5E-s2362731--b9d67638672540f5e65a2dff46cda1f0.nii.gz

SWU_4/sub-0025650/ses-1/mri/m0wp3sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/m6/MD5E-s2512425--0fb8b272616ed877aff7a00c480bc92e.nii.gz/MD5E-s2512425--0fb8b272616ed877aff7a00c480bc92e.nii.gz

SWU_4/sub-0025650/ses-1/mri/mori_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025650/ses-1/mri/mori_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/9F/MD5E-s191896--c16656fded216a7c16d00b74db90f983.nii.gz/MD5E-s191896--c16656fded216a7c16d00b74db90f983.nii.gz

SWU_4/sub-0025650/ses-1/mri/mwp1sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FF/47/MD5E-s2582459--5cd9da4c11425d3ed0f3f12e99c99ff1.nii.gz/MD5E-s2582459--5cd9da4c11425d3ed0f3f12e99c99ff1.nii.gz

SWU_4/sub-0025650/ses-1/mri/mwp2sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/Gz/MD5E-s2362131--3a8e7504afd632e634b44227586f8433.nii.gz/MD5E-s2362131--3a8e7504afd632e634b44227586f8433.nii.gz

SWU_4/sub-0025650/ses-1/mri/mwp3sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/vp/MD5E-s2510106--a12f712bac8eb10c9104c1b59974a257.nii.gz/MD5E-s2510106--a12f712bac8eb10c9104c1b59974a257.nii.gz

SWU_4/sub-0025650/ses-1/mri/neuromorphometrics_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025650/ses-1/mri/neuromorphometrics_sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/Km/MD5E-s221160--6deb5d7574787b62a8f38b2fa50771ba.nii.gz/MD5E-s221160--6deb5d7574787b62a8f38b2fa50771ba.nii.gz

SWU_4/sub-0025650/ses-1/mri/p0sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/km/MD5E-s758933--061646c627b12e5b56420db9458f0df9.nii.gz/MD5E-s758933--061646c627b12e5b56420db9458f0df9.nii.gz

SWU_4/sub-0025650/ses-1/mri/p1sub-0025650_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/w4/MD5E-s814886--f3d420d5f671c3059e0203b52b8ef7e1.nii.gz/MD5E-s814886--f3d420d5f671c3059e0203b52b8ef7e1.nii.gz

SWU_4/sub-0025650/ses-1/mri/p2sub-0025650_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025650/ses-1/mri/p3sub-0025650_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025650/ses-1/mri/rp1sub-0025650_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025650/ses-1/mri/rp2sub-0025650_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025650/ses-1/mri/rp3sub-0025650_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025650/ses-1/mri/t_sub-0025650_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/w3/MD5E-s283--97bfffc3bc355f0a84341e67fad1d9cb.mat/MD5E-s283--97bfffc3bc355f0a84341e67fad1d9cb.mat

SWU_4/sub-0025650/ses-1/mri/t_sub-0025650_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025650/ses-1/mri/thalamus_sub-0025650_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025650/ses-1/mri/thalamus_sub-0025650_ses-1_run-1_T1w.nii.gz

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