[DATALAD RUNCMD] Compute BNU_1/sub-0025877/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025877/ses-1/anat/sub-0025877_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025877/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025877/ses-1/label/catROI_sub-0025877_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7K/q7/MD5E-s61346--a72da12b8dd38f0ab4f1e9d40666e721.mat/MD5E-s61346--a72da12b8dd38f0ab4f1e9d40666e721.mat

BNU_1/sub-0025877/ses-1/label/catROI_sub-0025877_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xj/gk/MD5E-s188501--a573a9c05f055f53b0cab4ffd9ce1577.xml/MD5E-s188501--a573a9c05f055f53b0cab4ffd9ce1577.xml

BNU_1/sub-0025877/ses-1/label/catROIs_sub-0025877_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/WP/MD5E-s120012--f36acb59d62f4d1b510cebc0db99bee6.mat/MD5E-s120012--f36acb59d62f4d1b510cebc0db99bee6.mat

BNU_1/sub-0025877/ses-1/label/catROIs_sub-0025877_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wk/Zg/MD5E-s332152--d8c11c1c81f6cba3a21309949fcae51c.xml/MD5E-s332152--d8c11c1c81f6cba3a21309949fcae51c.xml

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/FX/MD5E-s165605--815aa529c8c3ac499162b6bcd1292e1c.nii.gz/MD5E-s165605--815aa529c8c3ac499162b6bcd1292e1c.nii.gz

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/pV/MD5E-s184304--a0ba46b74be75e8c7581681bdc5f1289.nii.gz/MD5E-s184304--a0ba46b74be75e8c7581681bdc5f1289.nii.gz

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/wk/MD5E-s248809--36c08d348ced62a992a11858f6ee7cb2.nii.gz/MD5E-s248809--36c08d348ced62a992a11858f6ee7cb2.nii.gz

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025877/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/83/MD5E-s277440--f445137c6fb2eabc726f1644a2fdcdb0.nii.gz/MD5E-s277440--f445137c6fb2eabc726f1644a2fdcdb0.nii.gz

BNU_1/sub-0025877/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025877/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/Vw/MD5E-s21601--ac26c45be672a5dd5cfce9fb950df09d.nii.gz/MD5E-s21601--ac26c45be672a5dd5cfce9fb950df09d.nii.gz

BNU_1/sub-0025877/ses-1/mri/aal3_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025877/ses-1/mri/aal3_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/zm/MD5E-s187755--5251e11bb0c3384be244f8acf97f2390.nii.gz/MD5E-s187755--5251e11bb0c3384be244f8acf97f2390.nii.gz

BNU_1/sub-0025877/ses-1/mri/anatomy3_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025877/ses-1/mri/anatomy3_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/Gg/MD5E-s131893--33124d2204af05625d3b9f6e110f884e.nii.gz/MD5E-s131893--33124d2204af05625d3b9f6e110f884e.nii.gz

BNU_1/sub-0025877/ses-1/mri/anon_misub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/g4/MD5E-s4487540--05fb5aba4f1a1016fd9b0c8ac9d75045.nii.gz/MD5E-s4487540--05fb5aba4f1a1016fd9b0c8ac9d75045.nii.gz

BNU_1/sub-0025877/ses-1/mri/anon_msub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/15/Xf/MD5E-s10989034--7c4acc4539134284e2304839436e9131.nii.gz/MD5E-s10989034--7c4acc4539134284e2304839436e9131.nii.gz

BNU_1/sub-0025877/ses-1/mri/cat_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/zM/MD5E-s100221--7c3d43d4ad00746aa3b86087e59a843d.nii.gz/MD5E-s100221--7c3d43d4ad00746aa3b86087e59a843d.nii.gz

BNU_1/sub-0025877/ses-1/mri/cobra_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025877/ses-1/mri/cobra_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gX/K7/MD5E-s45250--8b52e7dfcf20b1223a4b873ba035413c.nii.gz/MD5E-s45250--8b52e7dfcf20b1223a4b873ba035413c.nii.gz

BNU_1/sub-0025877/ses-1/mri/hammers_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025877/ses-1/mri/hammers_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kQ/q9/MD5E-s147501--3a83777546b537d6cd5db7f6dc89e3bf.nii.gz/MD5E-s147501--3a83777546b537d6cd5db7f6dc89e3bf.nii.gz

BNU_1/sub-0025877/ses-1/mri/ibsr_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025877/ses-1/mri/ibsr_sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/zg/MD5E-s157933--9b1545a358ec7943f4a23d4fa06899a2.nii.gz/MD5E-s157933--9b1545a358ec7943f4a23d4fa06899a2.nii.gz

BNU_1/sub-0025877/ses-1/mri/it_sub-0025877_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/wV/MD5E-s281--5600bbd9818453690e67ee24936578eb.mat/MD5E-s281--5600bbd9818453690e67ee24936578eb.mat

BNU_1/sub-0025877/ses-1/mri/it_sub-0025877_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/k4/MD5E-s283--9c9e67e1719bb115e41ca5e135022103.mat/MD5E-s283--9c9e67e1719bb115e41ca5e135022103.mat

BNU_1/sub-0025877/ses-1/mri/iy_sub-0025877_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/gz/KJ/MD5E-s41572423--d439ed885aa9340e319e6b34a5be74d2.nii.gz/MD5E-s41572423--d439ed885aa9340e319e6b34a5be74d2.nii.gz

BNU_1/sub-0025877/ses-1/mri/julichbrain_sub-0025877_ses-1_run-1_T1w.csv

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BNU_1/sub-0025877/ses-1/mri/julichbrain_sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/lpba40_sub-0025877_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025877/ses-1/mri/lpba40_sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/m0wp1sub-0025877_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/jJ/MD5E-s2579123--3ac85f075a4c40e5ebe1e4959cfe9f74.nii.gz/MD5E-s2579123--3ac85f075a4c40e5ebe1e4959cfe9f74.nii.gz

BNU_1/sub-0025877/ses-1/mri/m0wp2sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/m0wp3sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/mori_sub-0025877_ses-1_run-1_T1w.csv

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BNU_1/sub-0025877/ses-1/mri/mori_sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/mwp1sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/mwp2sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/mwp3sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/neuromorphometrics_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025877/ses-1/mri/neuromorphometrics_sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/p0sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/p1sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/p2sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/p3sub-0025877_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025877/ses-1/mri/rp1sub-0025877_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025877/ses-1/mri/rp2sub-0025877_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025877/ses-1/mri/rp3sub-0025877_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025877/ses-1/mri/t_sub-0025877_ses-1_run-1_T1w_affine_reorient.mat

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BNU_1/sub-0025877/ses-1/mri/t_sub-0025877_ses-1_run-1_T1w_rigid_reorient.mat

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BNU_1/sub-0025877/ses-1/mri/thalamus_sub-0025877_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025877/ses-1/mri/thalamus_sub-0025877_ses-1_run-1_T1w.nii.gz

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