[DATALAD RUNCMD] Compute SWU_4/sub-0025711/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025711/ses-2/anat/sub-0025711_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025711/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025711/ses-2/label/catROI_sub-0025711_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/40/fZ/MD5E-s61292--6f7af2bd0cae794018d15ec1f4cc22b9.mat/MD5E-s61292--6f7af2bd0cae794018d15ec1f4cc22b9.mat

SWU_4/sub-0025711/ses-2/label/catROI_sub-0025711_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/X1/MD5E-s188485--963f059d022928cb1d99eefb5d0c4f79.xml/MD5E-s188485--963f059d022928cb1d99eefb5d0c4f79.xml

SWU_4/sub-0025711/ses-2/label/catROIs_sub-0025711_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/WJ/MD5E-s120091--aa36d0a8ac789cc97f1396fa0f94683d.mat/MD5E-s120091--aa36d0a8ac789cc97f1396fa0f94683d.mat

SWU_4/sub-0025711/ses-2/label/catROIs_sub-0025711_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/6K/MD5E-s332095--870b913d581ea462c140e8eeecd790bc.xml/MD5E-s332095--870b913d581ea462c140e8eeecd790bc.xml

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/g9/MD5E-s188906--e338b1abb85eed9a6a2ac32ae073ade5.nii.gz/MD5E-s188906--e338b1abb85eed9a6a2ac32ae073ade5.nii.gz

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xX/6w/MD5E-s213640--b9fad9b3b649f0fb890c56e613004060.nii.gz/MD5E-s213640--b9fad9b3b649f0fb890c56e613004060.nii.gz

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/1X/MD5E-s284804--15bb6aa7e844e1edcc2348c72a90a851.nii.gz/MD5E-s284804--15bb6aa7e844e1edcc2348c72a90a851.nii.gz

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025711/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/4p/MD5E-s317903--b0ad427da42d091c52e720f16279d3a3.nii.gz/MD5E-s317903--b0ad427da42d091c52e720f16279d3a3.nii.gz

SWU_4/sub-0025711/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025711/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/Gj/MD5E-s27099--e5c2f0c2a958e5120a6840ac005828f8.nii.gz/MD5E-s27099--e5c2f0c2a958e5120a6840ac005828f8.nii.gz

SWU_4/sub-0025711/ses-2/mri/aal3_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025711/ses-2/mri/aal3_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/P6/MD5E-s213042--69cd2fb9df6567877b290eb038fa0fe5.nii.gz/MD5E-s213042--69cd2fb9df6567877b290eb038fa0fe5.nii.gz

SWU_4/sub-0025711/ses-2/mri/anatomy3_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025711/ses-2/mri/anatomy3_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fg/qm/MD5E-s154442--3da44f3ba4c8db22bb955b39d1034ea6.nii.gz/MD5E-s154442--3da44f3ba4c8db22bb955b39d1034ea6.nii.gz

SWU_4/sub-0025711/ses-2/mri/anon_misub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/K7/MD5E-s10006295--30bb586ad5496bbf619d61520ea6d22b.nii.gz/MD5E-s10006295--30bb586ad5496bbf619d61520ea6d22b.nii.gz

SWU_4/sub-0025711/ses-2/mri/anon_msub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/JX/MD5E-s11328556--4d7a11c8320af493fecb40f698400982.nii.gz/MD5E-s11328556--4d7a11c8320af493fecb40f698400982.nii.gz

SWU_4/sub-0025711/ses-2/mri/cat_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/43/MD5E-s115263--e8fc5f0d8cfe5a0dc0f8e95a030519cc.nii.gz/MD5E-s115263--e8fc5f0d8cfe5a0dc0f8e95a030519cc.nii.gz

SWU_4/sub-0025711/ses-2/mri/cobra_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025711/ses-2/mri/cobra_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/M0/MD5E-s52174--bb7ef2fa7988731cc53e46c55ced6381.nii.gz/MD5E-s52174--bb7ef2fa7988731cc53e46c55ced6381.nii.gz

SWU_4/sub-0025711/ses-2/mri/hammers_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025711/ses-2/mri/hammers_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7G/3M/MD5E-s168111--96af13e82b79aae30e8b7e49985e42ad.nii.gz/MD5E-s168111--96af13e82b79aae30e8b7e49985e42ad.nii.gz

SWU_4/sub-0025711/ses-2/mri/ibsr_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025711/ses-2/mri/ibsr_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/pQ/MD5E-s177761--2ac2d47e8e55511886a41ef80cd1fa28.nii.gz/MD5E-s177761--2ac2d47e8e55511886a41ef80cd1fa28.nii.gz

SWU_4/sub-0025711/ses-2/mri/it_sub-0025711_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/j3/MD5E-s283--7eab94fa1059d8328fbcfaeb362ac2bd.mat/MD5E-s283--7eab94fa1059d8328fbcfaeb362ac2bd.mat

SWU_4/sub-0025711/ses-2/mri/it_sub-0025711_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/fk/MD5E-s283--5b0905e21cdba5960029c3c518de766b.mat/MD5E-s283--5b0905e21cdba5960029c3c518de766b.mat

SWU_4/sub-0025711/ses-2/mri/iy_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z1/8j/MD5E-s54930224--1a34751e9ce3a7292a150840133b5369.nii.gz/MD5E-s54930224--1a34751e9ce3a7292a150840133b5369.nii.gz

SWU_4/sub-0025711/ses-2/mri/julichbrain_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025711/ses-2/mri/julichbrain_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/zw/MD5E-s228604--2d964892fbe87ef654fe5972230dc21e.nii.gz/MD5E-s228604--2d964892fbe87ef654fe5972230dc21e.nii.gz

SWU_4/sub-0025711/ses-2/mri/lpba40_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025711/ses-2/mri/lpba40_sub-0025711_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025711/ses-2/mri/m0wp1sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/1p/MD5E-s2572930--5f98dfb48d587c032aec2c37da47ddfe.nii.gz/MD5E-s2572930--5f98dfb48d587c032aec2c37da47ddfe.nii.gz

SWU_4/sub-0025711/ses-2/mri/m0wp2sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/KV/MD5E-s2322425--47ccf8d8f7750576d89f6b9feda05272.nii.gz/MD5E-s2322425--47ccf8d8f7750576d89f6b9feda05272.nii.gz

SWU_4/sub-0025711/ses-2/mri/m0wp3sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1M/67/MD5E-s2534701--964e35a06fff5ce2d4d68c0bca414c49.nii.gz/MD5E-s2534701--964e35a06fff5ce2d4d68c0bca414c49.nii.gz

SWU_4/sub-0025711/ses-2/mri/mori_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025711/ses-2/mri/mori_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/3q/MD5E-s196655--d35705098916766e7085e145ffa1ff6e.nii.gz/MD5E-s196655--d35705098916766e7085e145ffa1ff6e.nii.gz

SWU_4/sub-0025711/ses-2/mri/mwp1sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025711/ses-2/mri/mwp2sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025711/ses-2/mri/mwp3sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025711/ses-2/mri/neuromorphometrics_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025711/ses-2/mri/neuromorphometrics_sub-0025711_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025711/ses-2/mri/p0sub-0025711_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/13/w1/MD5E-s757024--59306066a06b8940dd23d8e5cb8381a8.nii.gz/MD5E-s757024--59306066a06b8940dd23d8e5cb8381a8.nii.gz

SWU_4/sub-0025711/ses-2/mri/p1sub-0025711_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025711/ses-2/mri/p2sub-0025711_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025711/ses-2/mri/p3sub-0025711_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025711/ses-2/mri/rp1sub-0025711_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025711/ses-2/mri/rp2sub-0025711_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025711/ses-2/mri/rp3sub-0025711_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025711/ses-2/mri/t_sub-0025711_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/3X/MD5E-s284--4f041ab1463f3aac85d0fd730a9a5d78.mat/MD5E-s284--4f041ab1463f3aac85d0fd730a9a5d78.mat

SWU_4/sub-0025711/ses-2/mri/t_sub-0025711_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025711/ses-2/mri/thalamus_sub-0025711_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025711/ses-2/mri/thalamus_sub-0025711_ses-2_run-1_T1w.nii.gz

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