[DATALAD RUNCMD] Compute NYU_2/sub-0025071/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025071/ses-1/anat/sub-0025071_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025071/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025071/ses-1/label/catROI_sub-0025071_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gK/FG/MD5E-s58152--d3426cd8535be4711ad293f4b59ce719.mat/MD5E-s58152--d3426cd8535be4711ad293f4b59ce719.mat

NYU_2/sub-0025071/ses-1/label/catROI_sub-0025071_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/G7/MD5E-s188641--c4d3049909503002f45d300ba30dff8f.xml/MD5E-s188641--c4d3049909503002f45d300ba30dff8f.xml

NYU_2/sub-0025071/ses-1/label/catROIs_sub-0025071_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/qG/MD5E-s120184--6d84543effa8706a860c08e69c4eef49.mat/MD5E-s120184--6d84543effa8706a860c08e69c4eef49.mat

NYU_2/sub-0025071/ses-1/label/catROIs_sub-0025071_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/z1/MD5E-s332104--764216bb423a1e1c2d081cab70cf92ac.xml/MD5E-s332104--764216bb423a1e1c2d081cab70cf92ac.xml

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/Xv/MD5E-s155278--4350ead1f947498166b597e72e4fc802.nii.gz/MD5E-s155278--4350ead1f947498166b597e72e4fc802.nii.gz

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/6W/MD5E-s174137--5cd81218f811ed3456da38bae1412c27.nii.gz/MD5E-s174137--5cd81218f811ed3456da38bae1412c27.nii.gz

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZF/1q/MD5E-s232156--65aa23852d8326734672c256f1facc27.nii.gz/MD5E-s232156--65aa23852d8326734672c256f1facc27.nii.gz

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025071/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/gF/MD5E-s259014--449be88c2c4e9494e036e456506d483f.nii.gz/MD5E-s259014--449be88c2c4e9494e036e456506d483f.nii.gz

NYU_2/sub-0025071/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025071/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/MW/MD5E-s19713--2338f0f8450c440088d592191492b255.nii.gz/MD5E-s19713--2338f0f8450c440088d592191492b255.nii.gz

NYU_2/sub-0025071/ses-1/mri/aal3_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025071/ses-1/mri/aal3_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xg/FQ/MD5E-s176103--96cce04c847e3c5b2f523fe111bd2e9f.nii.gz/MD5E-s176103--96cce04c847e3c5b2f523fe111bd2e9f.nii.gz

NYU_2/sub-0025071/ses-1/mri/anatomy3_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025071/ses-1/mri/anatomy3_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/wM/MD5E-s124476--760a146af71b93aa12b685e1939b659f.nii.gz/MD5E-s124476--760a146af71b93aa12b685e1939b659f.nii.gz

NYU_2/sub-0025071/ses-1/mri/anon_misub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/Z8/MD5E-s4125299--5fa0abc63b30e946125ddf956701c034.nii.gz/MD5E-s4125299--5fa0abc63b30e946125ddf956701c034.nii.gz

NYU_2/sub-0025071/ses-1/mri/anon_msub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/Kz/MD5E-s9313731--175e0a43f93c10a2e492cc9a3197385a.nii.gz/MD5E-s9313731--175e0a43f93c10a2e492cc9a3197385a.nii.gz

NYU_2/sub-0025071/ses-1/mri/cat_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/mg/MD5E-s89504--0d73b352987807f36482fe66710b8942.nii.gz/MD5E-s89504--0d73b352987807f36482fe66710b8942.nii.gz

NYU_2/sub-0025071/ses-1/mri/cobra_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025071/ses-1/mri/cobra_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/8v/MD5E-s41898--1c18d3cfe26afc30d2f021c37096e704.nii.gz/MD5E-s41898--1c18d3cfe26afc30d2f021c37096e704.nii.gz

NYU_2/sub-0025071/ses-1/mri/hammers_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025071/ses-1/mri/hammers_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9X/vK/MD5E-s136555--22c0c1123793c818278c2e1a045a1dd1.nii.gz/MD5E-s136555--22c0c1123793c818278c2e1a045a1dd1.nii.gz

NYU_2/sub-0025071/ses-1/mri/ibsr_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025071/ses-1/mri/ibsr_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/9Q/MD5E-s144163--3669ad683ecd66293b9ba59a8b46b2c2.nii.gz/MD5E-s144163--3669ad683ecd66293b9ba59a8b46b2c2.nii.gz

NYU_2/sub-0025071/ses-1/mri/it_sub-0025071_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/87/MD5E-s283--cc1fa385ba9dd157eb5fb0733278764d.mat/MD5E-s283--cc1fa385ba9dd157eb5fb0733278764d.mat

NYU_2/sub-0025071/ses-1/mri/it_sub-0025071_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/gm/MD5E-s283--7aec23c03825e2bd5de1a3124876d8db.mat/MD5E-s283--7aec23c03825e2bd5de1a3124876d8db.mat

NYU_2/sub-0025071/ses-1/mri/iy_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/wQ/MD5E-s38028228--a97dc827a16326eba45e96dd76c29cfb.nii.gz/MD5E-s38028228--a97dc827a16326eba45e96dd76c29cfb.nii.gz

NYU_2/sub-0025071/ses-1/mri/julichbrain_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025071/ses-1/mri/julichbrain_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5W/z4/MD5E-s184727--01645ec1537cc2c1fee0d6e24bfba961.nii.gz/MD5E-s184727--01645ec1537cc2c1fee0d6e24bfba961.nii.gz

NYU_2/sub-0025071/ses-1/mri/lpba40_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025071/ses-1/mri/lpba40_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/mJ/MD5E-s134103--eca06751e9c0bdd6f81bf195cf47dbbc.nii.gz/MD5E-s134103--eca06751e9c0bdd6f81bf195cf47dbbc.nii.gz

NYU_2/sub-0025071/ses-1/mri/m0wp1sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/kx/MD5E-s2595630--e1d372abecd1774cd135d07b744a54ac.nii.gz/MD5E-s2595630--e1d372abecd1774cd135d07b744a54ac.nii.gz

NYU_2/sub-0025071/ses-1/mri/m0wp2sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/33/MD5E-s2264312--2ad417c06f93043bb598d596ccbe433b.nii.gz/MD5E-s2264312--2ad417c06f93043bb598d596ccbe433b.nii.gz

NYU_2/sub-0025071/ses-1/mri/m0wp3sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/pf/MD5E-s2363871--564ffa209063ab49fa62f5b50f2600d4.nii.gz/MD5E-s2363871--564ffa209063ab49fa62f5b50f2600d4.nii.gz

NYU_2/sub-0025071/ses-1/mri/mori_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025071/ses-1/mri/mori_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/V9/MD5E-s159853--0f1f72cb509fb9ac6dfa3ad406400bcc.nii.gz/MD5E-s159853--0f1f72cb509fb9ac6dfa3ad406400bcc.nii.gz

NYU_2/sub-0025071/ses-1/mri/mwp1sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/92/MD5E-s2595576--299ea8b0a4e8b979b6959313055fd355.nii.gz/MD5E-s2595576--299ea8b0a4e8b979b6959313055fd355.nii.gz

NYU_2/sub-0025071/ses-1/mri/mwp2sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025071/ses-1/mri/mwp3sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/G3/MD5E-s2360537--8389373f8694c17a50ea4f4b9db6f788.nii.gz/MD5E-s2360537--8389373f8694c17a50ea4f4b9db6f788.nii.gz

NYU_2/sub-0025071/ses-1/mri/neuromorphometrics_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025071/ses-1/mri/neuromorphometrics_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/5X/MD5E-s188506--c09fdae1c088c259cce5de0c39728b58.nii.gz/MD5E-s188506--c09fdae1c088c259cce5de0c39728b58.nii.gz

NYU_2/sub-0025071/ses-1/mri/p0sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/0X/MD5E-s772150--0b1fddeab9c30f25c2708e148eb09f9d.nii.gz/MD5E-s772150--0b1fddeab9c30f25c2708e148eb09f9d.nii.gz

NYU_2/sub-0025071/ses-1/mri/p1sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/F1/MD5E-s810869--3e55a2c788b25d6282c88a0e107c8865.nii.gz/MD5E-s810869--3e55a2c788b25d6282c88a0e107c8865.nii.gz

NYU_2/sub-0025071/ses-1/mri/p2sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/mp/MD5E-s566732--f3ed5cf63d5511fab5f48d73c4a1266c.nii.gz/MD5E-s566732--f3ed5cf63d5511fab5f48d73c4a1266c.nii.gz

NYU_2/sub-0025071/ses-1/mri/p3sub-0025071_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025071/ses-1/mri/rp1sub-0025071_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025071/ses-1/mri/rp2sub-0025071_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025071/ses-1/mri/rp3sub-0025071_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025071/ses-1/mri/t_sub-0025071_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025071/ses-1/mri/t_sub-0025071_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/85/MD5E-s284--08b0dac89e5f72553a022f2ba9a0fb4f.mat/MD5E-s284--08b0dac89e5f72553a022f2ba9a0fb4f.mat

NYU_2/sub-0025071/ses-1/mri/thalamus_sub-0025071_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025071/ses-1/mri/thalamus_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025071/ses-1/mri/wj_sub-0025071_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025071/ses-1/mri/wmisub-0025071_ses-1_run-1_T1w.nii.gz

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