[DATALAD RUNCMD] Compute NYU_2/sub-0025119/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025119/ses-1/anat/sub-0025119_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025119/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025119/ses-1/label/catROI_sub-0025119_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/XK/MD5E-s57742--01e55adbdcccfa9a4e455521d49651cc.mat/MD5E-s57742--01e55adbdcccfa9a4e455521d49651cc.mat

NYU_2/sub-0025119/ses-1/label/catROI_sub-0025119_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/XG/MD5E-s189022--b4a53bd9a79428562f31b6a92f080031.xml/MD5E-s189022--b4a53bd9a79428562f31b6a92f080031.xml

NYU_2/sub-0025119/ses-1/label/catROIs_sub-0025119_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/Qm/MD5E-s120214--c0cfae3196e9c67ecae929dde7b50708.mat/MD5E-s120214--c0cfae3196e9c67ecae929dde7b50708.mat

NYU_2/sub-0025119/ses-1/label/catROIs_sub-0025119_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/jP/MD5E-s332102--f907581cdaf7b5c4a1a17d50b1df655b.xml/MD5E-s332102--f907581cdaf7b5c4a1a17d50b1df655b.xml

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7M/WZ/MD5E-s136978--e608232188036ae68e1d55c87b8c972c.nii.gz/MD5E-s136978--e608232188036ae68e1d55c87b8c972c.nii.gz

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/z4/MD5E-s153756--369fa0e096aa6a5feb51d54ae7d7b7c3.nii.gz/MD5E-s153756--369fa0e096aa6a5feb51d54ae7d7b7c3.nii.gz

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/jF/MD5E-s205926--3a94da91f4c93b5052111052b812b062.nii.gz/MD5E-s205926--3a94da91f4c93b5052111052b812b062.nii.gz

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025119/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z8/jg/MD5E-s228398--f7f7099b040fc27edb81b8ba0dbe4471.nii.gz/MD5E-s228398--f7f7099b040fc27edb81b8ba0dbe4471.nii.gz

NYU_2/sub-0025119/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025119/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/9x/MD5E-s18481--9728e2694b5be6581de446e53ea46302.nii.gz/MD5E-s18481--9728e2694b5be6581de446e53ea46302.nii.gz

NYU_2/sub-0025119/ses-1/mri/aal3_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025119/ses-1/mri/aal3_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/x7/MD5E-s155029--49897639d6e710f820a1b3f91d6c9b3e.nii.gz/MD5E-s155029--49897639d6e710f820a1b3f91d6c9b3e.nii.gz

NYU_2/sub-0025119/ses-1/mri/anatomy3_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025119/ses-1/mri/anatomy3_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/1W/MD5E-s109208--26569ce0aa29ad654e0963c89d849824.nii.gz/MD5E-s109208--26569ce0aa29ad654e0963c89d849824.nii.gz

NYU_2/sub-0025119/ses-1/mri/anon_misub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/pv/MD5E-s3694114--1fac63d047015114908106f22e97ac6b.nii.gz/MD5E-s3694114--1fac63d047015114908106f22e97ac6b.nii.gz

NYU_2/sub-0025119/ses-1/mri/anon_msub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/v5/MD5E-s7073945--fda6956723f6d7021c41f7ac06ed1abc.nii.gz/MD5E-s7073945--fda6956723f6d7021c41f7ac06ed1abc.nii.gz

NYU_2/sub-0025119/ses-1/mri/cat_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/70/MD5E-s81059--0bfb3f379c1ddf5bca5ccd16ac06cf64.nii.gz/MD5E-s81059--0bfb3f379c1ddf5bca5ccd16ac06cf64.nii.gz

NYU_2/sub-0025119/ses-1/mri/cobra_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025119/ses-1/mri/cobra_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/Xq/MD5E-s36966--c2d3c289b39b72b3964442b38852171b.nii.gz/MD5E-s36966--c2d3c289b39b72b3964442b38852171b.nii.gz

NYU_2/sub-0025119/ses-1/mri/hammers_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025119/ses-1/mri/hammers_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/2z/MD5E-s118254--9dee9a18f806978b59b0b2957d9311d9.nii.gz/MD5E-s118254--9dee9a18f806978b59b0b2957d9311d9.nii.gz

NYU_2/sub-0025119/ses-1/mri/ibsr_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025119/ses-1/mri/ibsr_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/2q/MD5E-s125652--ae571638e35b63c61a2bb568becc1884.nii.gz/MD5E-s125652--ae571638e35b63c61a2bb568becc1884.nii.gz

NYU_2/sub-0025119/ses-1/mri/it_sub-0025119_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/F9/MD5E-s283--aa7f36d4c647eb36d0a2a29fb7cac922.mat/MD5E-s283--aa7f36d4c647eb36d0a2a29fb7cac922.mat

NYU_2/sub-0025119/ses-1/mri/it_sub-0025119_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/87/wG/MD5E-s284--8bd03cda18ad2d884998b09cad04fc6f.mat/MD5E-s284--8bd03cda18ad2d884998b09cad04fc6f.mat

NYU_2/sub-0025119/ses-1/mri/iy_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/XV/MD5E-s31772844--57cac92939c290dd5d28fba2df6bfd55.nii.gz/MD5E-s31772844--57cac92939c290dd5d28fba2df6bfd55.nii.gz

NYU_2/sub-0025119/ses-1/mri/julichbrain_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025119/ses-1/mri/julichbrain_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/Kj/MD5E-s161060--753dea12b79a011df735e4e821fed36e.nii.gz/MD5E-s161060--753dea12b79a011df735e4e821fed36e.nii.gz

NYU_2/sub-0025119/ses-1/mri/lpba40_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025119/ses-1/mri/lpba40_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G2/v0/MD5E-s117574--84486ed4a783fc9217ba093738cc2ba0.nii.gz/MD5E-s117574--84486ed4a783fc9217ba093738cc2ba0.nii.gz

NYU_2/sub-0025119/ses-1/mri/m0wp1sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fX/XZ/MD5E-s2588886--94560f735cccb5baf3f744bcb6163983.nii.gz/MD5E-s2588886--94560f735cccb5baf3f744bcb6163983.nii.gz

NYU_2/sub-0025119/ses-1/mri/m0wp2sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/Q4/MD5E-s2276772--878f8d71ec73b012ce12626d34e74d3f.nii.gz/MD5E-s2276772--878f8d71ec73b012ce12626d34e74d3f.nii.gz

NYU_2/sub-0025119/ses-1/mri/m0wp3sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/MK/MD5E-s2426536--63a32ccc9deec1a6d18b8060e2268206.nii.gz/MD5E-s2426536--63a32ccc9deec1a6d18b8060e2268206.nii.gz

NYU_2/sub-0025119/ses-1/mri/mori_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025119/ses-1/mri/mori_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Q/q7/MD5E-s140612--854361ffe0736358314d028c1d8c3afa.nii.gz/MD5E-s140612--854361ffe0736358314d028c1d8c3afa.nii.gz

NYU_2/sub-0025119/ses-1/mri/mwp1sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/fF/MD5E-s2595369--1daf49a019cf2d469b75a125e9e65205.nii.gz/MD5E-s2595369--1daf49a019cf2d469b75a125e9e65205.nii.gz

NYU_2/sub-0025119/ses-1/mri/mwp2sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/Jj/MD5E-s2279852--6a4bb3f7f9b2024051b01aa1b04d508b.nii.gz/MD5E-s2279852--6a4bb3f7f9b2024051b01aa1b04d508b.nii.gz

NYU_2/sub-0025119/ses-1/mri/mwp3sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/63/MD5E-s2422565--c4fa0fbf39583b87cdb824bbd6222eee.nii.gz/MD5E-s2422565--c4fa0fbf39583b87cdb824bbd6222eee.nii.gz

NYU_2/sub-0025119/ses-1/mri/neuromorphometrics_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025119/ses-1/mri/neuromorphometrics_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025119/ses-1/mri/p0sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/4w/MD5E-s673881--11922cd9bc0f0c00e19b2495aa619c6b.nii.gz/MD5E-s673881--11922cd9bc0f0c00e19b2495aa619c6b.nii.gz

NYU_2/sub-0025119/ses-1/mri/p1sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/3G/MD5E-s704188--df4fe5ace85ac36a9e210f56bf12e593.nii.gz/MD5E-s704188--df4fe5ace85ac36a9e210f56bf12e593.nii.gz

NYU_2/sub-0025119/ses-1/mri/p2sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/2V/MD5E-s485184--12d90407a9dc4fc3f110d6304d4d72da.nii.gz/MD5E-s485184--12d90407a9dc4fc3f110d6304d4d72da.nii.gz

NYU_2/sub-0025119/ses-1/mri/p3sub-0025119_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025119/ses-1/mri/rp1sub-0025119_ses-1_run-1_T1w_affine.nii.gz

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+../../../../.git/annex/objects/XP/8j/MD5E-s451426--1ff37f90b7a282e35f9654b2300ad1dc.nii.gz/MD5E-s451426--1ff37f90b7a282e35f9654b2300ad1dc.nii.gz

NYU_2/sub-0025119/ses-1/mri/rp2sub-0025119_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025119/ses-1/mri/rp3sub-0025119_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025119/ses-1/mri/t_sub-0025119_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025119/ses-1/mri/t_sub-0025119_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/F5/MD5E-s283--b30be2bff7228029dbe9d6b909029aa5.mat/MD5E-s283--b30be2bff7228029dbe9d6b909029aa5.mat

NYU_2/sub-0025119/ses-1/mri/thalamus_sub-0025119_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025119/ses-1/mri/thalamus_sub-0025119_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025119/ses-1/mri/wj_sub-0025119_ses-1_run-1_T1w.nii.gz

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