[DATALAD RUNCMD] Compute NYU_2/sub-0025140/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025140/ses-1/anat/sub-0025140_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025140/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025140/ses-1/label/catROI_sub-0025140_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/Fj/MD5E-s58111--a3c1f5d361f15befa3eb5bf1e3ca3f21.mat/MD5E-s58111--a3c1f5d361f15befa3eb5bf1e3ca3f21.mat

NYU_2/sub-0025140/ses-1/label/catROI_sub-0025140_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/8j/MD5E-s188592--c50ab07d4e999d8c69e9c4bcd79f3917.xml/MD5E-s188592--c50ab07d4e999d8c69e9c4bcd79f3917.xml

NYU_2/sub-0025140/ses-1/label/catROI_sub-0025140_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GF/gg/MD5E-s58181--34d8346d77194c17f8426b3c4be279f3.mat/MD5E-s58181--34d8346d77194c17f8426b3c4be279f3.mat

NYU_2/sub-0025140/ses-1/label/catROI_sub-0025140_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qq/05/MD5E-s188567--bcf59f59b29ab9e8ccb6e94536d08bba.xml/MD5E-s188567--bcf59f59b29ab9e8ccb6e94536d08bba.xml

NYU_2/sub-0025140/ses-1/label/catROIs_sub-0025140_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/vP/MD5E-s120155--6174f185314454eaff16d465bf1b8dc8.mat/MD5E-s120155--6174f185314454eaff16d465bf1b8dc8.mat

NYU_2/sub-0025140/ses-1/label/catROIs_sub-0025140_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/zV/MD5E-s332168--6ab8ecc8fde39d49d2819abb37c184f7.xml/MD5E-s332168--6ab8ecc8fde39d49d2819abb37c184f7.xml

NYU_2/sub-0025140/ses-1/label/catROIs_sub-0025140_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0m/qm/MD5E-s120191--509cf94f053b6fa72ab3796c2084a1bd.mat/MD5E-s120191--509cf94f053b6fa72ab3796c2084a1bd.mat

NYU_2/sub-0025140/ses-1/label/catROIs_sub-0025140_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2G/FF/MD5E-s332149--9c363dc2ec77e89b86ca1d39645fb7bd.xml/MD5E-s332149--9c363dc2ec77e89b86ca1d39645fb7bd.xml

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qk/Kj/MD5E-s159677--612129b8a8a25a0580e39b465f0750bd.nii.gz/MD5E-s159677--612129b8a8a25a0580e39b465f0750bd.nii.gz

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8X/3z/MD5E-s159893--0da88ce19fdc5539d800bdcb6808a328.nii.gz/MD5E-s159893--0da88ce19fdc5539d800bdcb6808a328.nii.gz

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/Vx/MD5E-s178139--5337dbe7e611ca7ac888784cd3fe8dcb.nii.gz/MD5E-s178139--5337dbe7e611ca7ac888784cd3fe8dcb.nii.gz

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0m/QG/MD5E-s178440--457b2dc17a3207d6d2e4ad9db05804ac.nii.gz/MD5E-s178440--457b2dc17a3207d6d2e4ad9db05804ac.nii.gz

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/W4/MD5E-s237576--e79d0a09be78f4f98df6dc0d74828cab.nii.gz/MD5E-s237576--e79d0a09be78f4f98df6dc0d74828cab.nii.gz

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qG/ZP/MD5E-s238534--30e9c0f00c9706d9a1751336587c296a.nii.gz/MD5E-s238534--30e9c0f00c9706d9a1751336587c296a.nii.gz

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/2w/MD5E-s265905--3ceb023257922a77dc19390e279af39d.nii.gz/MD5E-s265905--3ceb023257922a77dc19390e279af39d.nii.gz

NYU_2/sub-0025140/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/j6/K2/MD5E-s266050--81c4095070aea32d49ea3b80f5a8da8c.nii.gz/MD5E-s266050--81c4095070aea32d49ea3b80f5a8da8c.nii.gz

NYU_2/sub-0025140/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/X9/MD5E-s20431--389c6d2b67db549c6c8615c1a0568a32.nii.gz/MD5E-s20431--389c6d2b67db549c6c8615c1a0568a32.nii.gz

NYU_2/sub-0025140/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/F7/K5/MD5E-s20173--bcb9c684d969e8c245d2d9605d6ad6d2.nii.gz/MD5E-s20173--bcb9c684d969e8c245d2d9605d6ad6d2.nii.gz

NYU_2/sub-0025140/ses-1/mri/aal3_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/8X/MD5E-s181192--e855ac23518c7e93c07a70bdb96a3bd3.nii.gz/MD5E-s181192--e855ac23518c7e93c07a70bdb96a3bd3.nii.gz

NYU_2/sub-0025140/ses-1/mri/aal3_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gz/15/MD5E-s181429--72c6773646ca4f9bd1f888a5ec4722f9.nii.gz/MD5E-s181429--72c6773646ca4f9bd1f888a5ec4722f9.nii.gz

NYU_2/sub-0025140/ses-1/mri/anatomy3_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/Fz/MD5E-s129666--e0355826394fa0effcfd92649cc7677b.nii.gz/MD5E-s129666--e0355826394fa0effcfd92649cc7677b.nii.gz

NYU_2/sub-0025140/ses-1/mri/anatomy3_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wg/kf/MD5E-s129033--518f2e18f7e7da2a956ebdba628c22b2.nii.gz/MD5E-s129033--518f2e18f7e7da2a956ebdba628c22b2.nii.gz

NYU_2/sub-0025140/ses-1/mri/anon_misub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/q0/MD5E-s4428000--656ba13e645a2975f641de4dc6b16627.nii.gz/MD5E-s4428000--656ba13e645a2975f641de4dc6b16627.nii.gz

NYU_2/sub-0025140/ses-1/mri/anon_misub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/m9/g9/MD5E-s4455962--cdd3d22a58ab08e80d258154a91dfbb6.nii.gz/MD5E-s4455962--cdd3d22a58ab08e80d258154a91dfbb6.nii.gz

NYU_2/sub-0025140/ses-1/mri/anon_msub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wx/4q/MD5E-s7821827--c1b92dcb669ab6cade2413627f18d120.nii.gz/MD5E-s7821827--c1b92dcb669ab6cade2413627f18d120.nii.gz

NYU_2/sub-0025140/ses-1/mri/anon_msub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5m/j8/MD5E-s7779465--ac0c4d5b2633411105212e3eaa8c00d7.nii.gz/MD5E-s7779465--ac0c4d5b2633411105212e3eaa8c00d7.nii.gz

NYU_2/sub-0025140/ses-1/mri/cat_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/pk/MD5E-s95045--ad48a1d63fadaa53057f84d1fe8efdd2.nii.gz/MD5E-s95045--ad48a1d63fadaa53057f84d1fe8efdd2.nii.gz

NYU_2/sub-0025140/ses-1/mri/cat_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0V/k9/MD5E-s95417--9a4ce11a3b6f1c8ef6d8d4a40de725d1.nii.gz/MD5E-s95417--9a4ce11a3b6f1c8ef6d8d4a40de725d1.nii.gz

NYU_2/sub-0025140/ses-1/mri/cobra_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pM/80/MD5E-s42444--a49c42dc6d56c07b937536d98f19a3b2.nii.gz/MD5E-s42444--a49c42dc6d56c07b937536d98f19a3b2.nii.gz

NYU_2/sub-0025140/ses-1/mri/cobra_sub-0025140_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025140/ses-1/mri/hammers_sub-0025140_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/5x/MD5E-s139082--590779e4e02c05d09309b093d3db9a97.nii.gz/MD5E-s139082--590779e4e02c05d09309b093d3db9a97.nii.gz

NYU_2/sub-0025140/ses-1/mri/hammers_sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/ibsr_sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/ibsr_sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/it_sub-0025140_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025140/ses-1/mri/it_sub-0025140_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025140/ses-1/mri/it_sub-0025140_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025140/ses-1/mri/it_sub-0025140_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025140/ses-1/mri/iy_sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/iy_sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/julichbrain_sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/julichbrain_sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/lpba40_sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/lpba40_sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/m0wp1sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/m0wp1sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/m0wp2sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/m0wp2sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/m0wp3sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/m0wp3sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/mori_sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/mori_sub-0025140_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/mwp1sub-0025140_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025140/ses-1/mri/mwp1sub-0025140_ses-1_run-2_T1w.nii.gz

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