[DATALAD RUNCMD] Compute BNU_2/sub-0025936/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025936/ses-1/anat/sub-0025936_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025936/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025936/ses-1/label/catROI_sub-0025936_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/jk/MD5E-s57904--8c69a975566ffee266b59d6ab685e75a.mat/MD5E-s57904--8c69a975566ffee266b59d6ab685e75a.mat

BNU_2/sub-0025936/ses-1/label/catROI_sub-0025936_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/GW/MD5E-s188728--ca0794f714b4ccfd2088703358cb798e.xml/MD5E-s188728--ca0794f714b4ccfd2088703358cb798e.xml

BNU_2/sub-0025936/ses-1/label/catROIs_sub-0025936_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m8/6Z/MD5E-s120110--5c1473f6f3b1851c16f6662a0c45e8b6.mat/MD5E-s120110--5c1473f6f3b1851c16f6662a0c45e8b6.mat

BNU_2/sub-0025936/ses-1/label/catROIs_sub-0025936_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/Q0/MD5E-s332081--3d6f38bb2b5580315b3d8c37b6ad7f25.xml/MD5E-s332081--3d6f38bb2b5580315b3d8c37b6ad7f25.xml

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/7X/MD5E-s154904--5c37fd1af88bbe11e30af8e6fe923c1f.nii.gz/MD5E-s154904--5c37fd1af88bbe11e30af8e6fe923c1f.nii.gz

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/94/84/MD5E-s174652--9e0a6d238ac74eb85c37c461539d395c.nii.gz/MD5E-s174652--9e0a6d238ac74eb85c37c461539d395c.nii.gz

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/v7/MD5E-s233685--211e5a0b9e79fe1065d124688da3fde9.nii.gz/MD5E-s233685--211e5a0b9e79fe1065d124688da3fde9.nii.gz

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025936/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/F2/MD5E-s261850--0ad61b3e81e435c86b9d7d5f01c17f99.nii.gz/MD5E-s261850--0ad61b3e81e435c86b9d7d5f01c17f99.nii.gz

BNU_2/sub-0025936/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025936/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q0/9w/MD5E-s22079--b426c9b9b474c93c537bf284482f0cfb.nii.gz/MD5E-s22079--b426c9b9b474c93c537bf284482f0cfb.nii.gz

BNU_2/sub-0025936/ses-1/mri/aal3_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025936/ses-1/mri/aal3_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/Q1/MD5E-s179647--6143e4a78db6497e4c5874e715aaf7ea.nii.gz/MD5E-s179647--6143e4a78db6497e4c5874e715aaf7ea.nii.gz

BNU_2/sub-0025936/ses-1/mri/anatomy3_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025936/ses-1/mri/anatomy3_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/w8/MD5E-s123212--26b5dd007b1a87b3e80076a3888c59cc.nii.gz/MD5E-s123212--26b5dd007b1a87b3e80076a3888c59cc.nii.gz

BNU_2/sub-0025936/ses-1/mri/anon_misub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W6/WQ/MD5E-s4507909--4b03b4aa7f26cc9d312f94267a890304.nii.gz/MD5E-s4507909--4b03b4aa7f26cc9d312f94267a890304.nii.gz

BNU_2/sub-0025936/ses-1/mri/anon_msub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7J/2p/MD5E-s9312600--826970e21d0bce80814c7b38a13267cc.nii.gz/MD5E-s9312600--826970e21d0bce80814c7b38a13267cc.nii.gz

BNU_2/sub-0025936/ses-1/mri/cat_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wx/6W/MD5E-s93830--bd147625668ae0504455283dacfe5583.nii.gz/MD5E-s93830--bd147625668ae0504455283dacfe5583.nii.gz

BNU_2/sub-0025936/ses-1/mri/cobra_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025936/ses-1/mri/cobra_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/FF/MD5E-s42916--a410afb139fd94b5975658167d287a20.nii.gz/MD5E-s42916--a410afb139fd94b5975658167d287a20.nii.gz

BNU_2/sub-0025936/ses-1/mri/hammers_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025936/ses-1/mri/hammers_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/Qg/MD5E-s141085--7ac33356614fafdb993b5e69a524390f.nii.gz/MD5E-s141085--7ac33356614fafdb993b5e69a524390f.nii.gz

BNU_2/sub-0025936/ses-1/mri/ibsr_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025936/ses-1/mri/ibsr_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/GV/MD5E-s146486--a557ac231b53b62c3349539ce36dcb18.nii.gz/MD5E-s146486--a557ac231b53b62c3349539ce36dcb18.nii.gz

BNU_2/sub-0025936/ses-1/mri/it_sub-0025936_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3Z/jX/MD5E-s285--d78c5e67cafe1387f02552cd65162de5.mat/MD5E-s285--d78c5e67cafe1387f02552cd65162de5.mat

BNU_2/sub-0025936/ses-1/mri/it_sub-0025936_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/2w/MD5E-s282--0ef7640e8eaaf6e22ca9928c950cc383.mat/MD5E-s282--0ef7640e8eaaf6e22ca9928c950cc383.mat

BNU_2/sub-0025936/ses-1/mri/iy_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fm/5x/MD5E-s37837477--dd900c73c7d1df39e0123a8414ffe0a4.nii.gz/MD5E-s37837477--dd900c73c7d1df39e0123a8414ffe0a4.nii.gz

BNU_2/sub-0025936/ses-1/mri/julichbrain_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025936/ses-1/mri/julichbrain_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/Qv/MD5E-s186552--ec13a74d96d61d9e7d09e2ee4a8f8dc0.nii.gz/MD5E-s186552--ec13a74d96d61d9e7d09e2ee4a8f8dc0.nii.gz

BNU_2/sub-0025936/ses-1/mri/lpba40_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025936/ses-1/mri/lpba40_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/76/MD5E-s137014--dc48656c42f2f30a0a38bb7066921602.nii.gz/MD5E-s137014--dc48656c42f2f30a0a38bb7066921602.nii.gz

BNU_2/sub-0025936/ses-1/mri/m0wp1sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/05/02/MD5E-s2573122--49aa7167f1644f0b9c61c29302fbbedf.nii.gz/MD5E-s2573122--49aa7167f1644f0b9c61c29302fbbedf.nii.gz

BNU_2/sub-0025936/ses-1/mri/m0wp2sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/FP/MD5E-s2282515--f8d961c9f4366d337aeaee043a99773b.nii.gz/MD5E-s2282515--f8d961c9f4366d337aeaee043a99773b.nii.gz

BNU_2/sub-0025936/ses-1/mri/m0wp3sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/m9/MD5E-s2445931--9dcec73acd2d23c0c21c769670475507.nii.gz/MD5E-s2445931--9dcec73acd2d23c0c21c769670475507.nii.gz

BNU_2/sub-0025936/ses-1/mri/mori_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025936/ses-1/mri/mori_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/8q/MD5E-s164970--a8306c2b7077804d862e72f8b1f6b2b0.nii.gz/MD5E-s164970--a8306c2b7077804d862e72f8b1f6b2b0.nii.gz

BNU_2/sub-0025936/ses-1/mri/mwp1sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/z6/MD5E-s2572559--fc6e4d2d38a093090cd5995d6dda94b0.nii.gz/MD5E-s2572559--fc6e4d2d38a093090cd5995d6dda94b0.nii.gz

BNU_2/sub-0025936/ses-1/mri/mwp2sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/6V/MD5E-s2279815--8f1284cf27b92998c45026d34cd0dda8.nii.gz/MD5E-s2279815--8f1284cf27b92998c45026d34cd0dda8.nii.gz

BNU_2/sub-0025936/ses-1/mri/mwp3sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/74/MD5E-s2442750--e3ad0a844705f779622cc184cd7332b8.nii.gz/MD5E-s2442750--e3ad0a844705f779622cc184cd7332b8.nii.gz

BNU_2/sub-0025936/ses-1/mri/neuromorphometrics_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025936/ses-1/mri/neuromorphometrics_sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/gM/MD5E-s190511--6867d4c4a95593af1e881106a8ecfc33.nii.gz/MD5E-s190511--6867d4c4a95593af1e881106a8ecfc33.nii.gz

BNU_2/sub-0025936/ses-1/mri/p0sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/k4/MD5E-s781508--eb89c10b9ccbb531fd75d147c0726207.nii.gz/MD5E-s781508--eb89c10b9ccbb531fd75d147c0726207.nii.gz

BNU_2/sub-0025936/ses-1/mri/p1sub-0025936_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/9k/MD5E-s800385--625e531772fd20c18a29c7e5a3097632.nii.gz/MD5E-s800385--625e531772fd20c18a29c7e5a3097632.nii.gz

BNU_2/sub-0025936/ses-1/mri/p2sub-0025936_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025936/ses-1/mri/p3sub-0025936_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025936/ses-1/mri/rp1sub-0025936_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025936/ses-1/mri/rp2sub-0025936_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025936/ses-1/mri/rp3sub-0025936_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025936/ses-1/mri/t_sub-0025936_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/Fz/MD5E-s284--73ac67aa7ed0bc2a305b3d8a800389d5.mat/MD5E-s284--73ac67aa7ed0bc2a305b3d8a800389d5.mat

BNU_2/sub-0025936/ses-1/mri/t_sub-0025936_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025936/ses-1/mri/thalamus_sub-0025936_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025936/ses-1/mri/thalamus_sub-0025936_ses-1_run-1_T1w.nii.gz

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