[DATALAD RUNCMD] Compute SWU_4/sub-0025853/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025853/ses-2/anat/sub-0025853_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025853/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025853/ses-2/label/catROI_sub-0025853_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/15/MD5E-s61244--0892f702e00c06ace5a056cdf81ac781.mat/MD5E-s61244--0892f702e00c06ace5a056cdf81ac781.mat

SWU_4/sub-0025853/ses-2/label/catROI_sub-0025853_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/JQ/MD5E-s188979--88ce41c8dd11d262ea9eb22ccbbc1120.xml/MD5E-s188979--88ce41c8dd11d262ea9eb22ccbbc1120.xml

SWU_4/sub-0025853/ses-2/label/catROIs_sub-0025853_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/kJ/MD5E-s119966--0b44166086751b8dd3355961f64c318c.mat/MD5E-s119966--0b44166086751b8dd3355961f64c318c.mat

SWU_4/sub-0025853/ses-2/label/catROIs_sub-0025853_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/Q1/MD5E-s332102--c5e6ef684e2cd87d11b3c1212d45a228.xml/MD5E-s332102--c5e6ef684e2cd87d11b3c1212d45a228.xml

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k3/J5/MD5E-s157245--69fe393e4ecc08fe178f4a4f7b9c860b.nii.gz/MD5E-s157245--69fe393e4ecc08fe178f4a4f7b9c860b.nii.gz

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/Z4/MD5E-s176599--49a1145a0e0e064982e6a17c7ccd9f67.nii.gz/MD5E-s176599--49a1145a0e0e064982e6a17c7ccd9f67.nii.gz

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/JV/MD5E-s237838--b26e01bca893b4e9a5a83d4f25b66367.nii.gz/MD5E-s237838--b26e01bca893b4e9a5a83d4f25b66367.nii.gz

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025853/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/Kj/MD5E-s265113--6052b23a200f3d1544a1fc23d2ea82cd.nii.gz/MD5E-s265113--6052b23a200f3d1544a1fc23d2ea82cd.nii.gz

SWU_4/sub-0025853/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025853/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/q7/MD5E-s24686--d81081be3c341a85dbc99279e55f723f.nii.gz/MD5E-s24686--d81081be3c341a85dbc99279e55f723f.nii.gz

SWU_4/sub-0025853/ses-2/mri/aal3_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025853/ses-2/mri/aal3_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/0V/MD5E-s180783--ddaad4147cc6476c63dff00255a44f79.nii.gz/MD5E-s180783--ddaad4147cc6476c63dff00255a44f79.nii.gz

SWU_4/sub-0025853/ses-2/mri/anatomy3_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025853/ses-2/mri/anatomy3_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/kJ/MD5E-s131198--3ac40cba7068e04444863cc2b0e640bf.nii.gz/MD5E-s131198--3ac40cba7068e04444863cc2b0e640bf.nii.gz

SWU_4/sub-0025853/ses-2/mri/anon_misub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/Mp/MD5E-s8918970--e212d73d339e1cf4479d75db3f1ed40a.nii.gz/MD5E-s8918970--e212d73d339e1cf4479d75db3f1ed40a.nii.gz

SWU_4/sub-0025853/ses-2/mri/anon_msub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/10/MD5E-s9954314--ed80f03a7eb382db31eca036ea6849cf.nii.gz/MD5E-s9954314--ed80f03a7eb382db31eca036ea6849cf.nii.gz

SWU_4/sub-0025853/ses-2/mri/cat_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/7m/MD5E-s94652--35f178c77b33eaf715f71f2cbe16adc0.nii.gz/MD5E-s94652--35f178c77b33eaf715f71f2cbe16adc0.nii.gz

SWU_4/sub-0025853/ses-2/mri/cobra_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025853/ses-2/mri/cobra_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/Fz/MD5E-s48038--44b25fc8fbd7bafbd640a22cc7f0cea0.nii.gz/MD5E-s48038--44b25fc8fbd7bafbd640a22cc7f0cea0.nii.gz

SWU_4/sub-0025853/ses-2/mri/hammers_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025853/ses-2/mri/hammers_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/X5/MD5E-s140755--3ad876d53dbfa68b57b60bf7438ac192.nii.gz/MD5E-s140755--3ad876d53dbfa68b57b60bf7438ac192.nii.gz

SWU_4/sub-0025853/ses-2/mri/ibsr_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025853/ses-2/mri/ibsr_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/1P/MD5E-s149893--4bd8df500e507d3622518b3879964c4e.nii.gz/MD5E-s149893--4bd8df500e507d3622518b3879964c4e.nii.gz

SWU_4/sub-0025853/ses-2/mri/it_sub-0025853_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/px/MD5E-s284--793f74fcca9491d63e55cb5092f82e0f.mat/MD5E-s284--793f74fcca9491d63e55cb5092f82e0f.mat

SWU_4/sub-0025853/ses-2/mri/it_sub-0025853_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/Vv/MD5E-s283--f8c64daf45d06bfc1cabff1b75fe90b5.mat/MD5E-s283--f8c64daf45d06bfc1cabff1b75fe90b5.mat

SWU_4/sub-0025853/ses-2/mri/iy_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/qQ/MD5E-s43960519--e6b9e374c38393a18556e2e7d21f0e9c.nii.gz/MD5E-s43960519--e6b9e374c38393a18556e2e7d21f0e9c.nii.gz

SWU_4/sub-0025853/ses-2/mri/julichbrain_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025853/ses-2/mri/julichbrain_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/W7/MD5E-s190055--077be1faaef247347b1d305b6f5ba89a.nii.gz/MD5E-s190055--077be1faaef247347b1d305b6f5ba89a.nii.gz

SWU_4/sub-0025853/ses-2/mri/lpba40_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025853/ses-2/mri/lpba40_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/Mp/MD5E-s138910--5420ab3b1622b4329ca94f2149fee112.nii.gz/MD5E-s138910--5420ab3b1622b4329ca94f2149fee112.nii.gz

SWU_4/sub-0025853/ses-2/mri/m0wp1sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/Vq/MD5E-s2576508--eb09e6d1fc9eb05d2d6d5067c55654c6.nii.gz/MD5E-s2576508--eb09e6d1fc9eb05d2d6d5067c55654c6.nii.gz

SWU_4/sub-0025853/ses-2/mri/m0wp2sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/02/MD5E-s2307416--b8dd1f7767ecf3ea4d7a1cc2c8741c44.nii.gz/MD5E-s2307416--b8dd1f7767ecf3ea4d7a1cc2c8741c44.nii.gz

SWU_4/sub-0025853/ses-2/mri/m0wp3sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vz/2P/MD5E-s2513643--c63dfdef7da428a6e1075a2b462a3692.nii.gz/MD5E-s2513643--c63dfdef7da428a6e1075a2b462a3692.nii.gz

SWU_4/sub-0025853/ses-2/mri/mori_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025853/ses-2/mri/mori_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/j0/MD5E-s164583--2d926ea00e24743bd6ae9068a3cb724b.nii.gz/MD5E-s164583--2d926ea00e24743bd6ae9068a3cb724b.nii.gz

SWU_4/sub-0025853/ses-2/mri/mwp1sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/0q/MD5E-s2584984--7d2c9279eceecc6f7e2f2d1f6661ed96.nii.gz/MD5E-s2584984--7d2c9279eceecc6f7e2f2d1f6661ed96.nii.gz

SWU_4/sub-0025853/ses-2/mri/mwp2sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/4Q/MD5E-s2309376--d12bc4139b1d289fca1c2773075f0457.nii.gz/MD5E-s2309376--d12bc4139b1d289fca1c2773075f0457.nii.gz

SWU_4/sub-0025853/ses-2/mri/mwp3sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FF/J1/MD5E-s2512260--d947028253837202f92653d3c562895f.nii.gz/MD5E-s2512260--d947028253837202f92653d3c562895f.nii.gz

SWU_4/sub-0025853/ses-2/mri/neuromorphometrics_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025853/ses-2/mri/neuromorphometrics_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/VK/MD5E-s191763--2712ab3ae78227f3a2b3d18c5d4211de.nii.gz/MD5E-s191763--2712ab3ae78227f3a2b3d18c5d4211de.nii.gz

SWU_4/sub-0025853/ses-2/mri/p0sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/Wg/MD5E-s609069--aacd7d6c188d90c48882b666c5b8ecd0.nii.gz/MD5E-s609069--aacd7d6c188d90c48882b666c5b8ecd0.nii.gz

SWU_4/sub-0025853/ses-2/mri/p1sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/20/MD5E-s649905--8616ea2510c5414578b74d769cd6acff.nii.gz/MD5E-s649905--8616ea2510c5414578b74d769cd6acff.nii.gz

SWU_4/sub-0025853/ses-2/mri/p2sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xz/49/MD5E-s427723--a9f46b4392ff78cc5baf5d80a823cd0d.nii.gz/MD5E-s427723--a9f46b4392ff78cc5baf5d80a823cd0d.nii.gz

SWU_4/sub-0025853/ses-2/mri/p3sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025853/ses-2/mri/rp1sub-0025853_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/6x/MD5E-s450372--1e01d6f791750f4d6d53a214a660e5cd.nii.gz/MD5E-s450372--1e01d6f791750f4d6d53a214a660e5cd.nii.gz

SWU_4/sub-0025853/ses-2/mri/rp2sub-0025853_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025853/ses-2/mri/rp3sub-0025853_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025853/ses-2/mri/t_sub-0025853_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025853/ses-2/mri/t_sub-0025853_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/KP/MD5E-s284--49703b6136f283cbaa0fa5b256f22c55.mat/MD5E-s284--49703b6136f283cbaa0fa5b256f22c55.mat

SWU_4/sub-0025853/ses-2/mri/thalamus_sub-0025853_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025853/ses-2/mri/thalamus_sub-0025853_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/0p/MD5E-s16322--91bb2e905b5f3c5b814809a90b6ae91a.nii.gz/MD5E-s16322--91bb2e905b5f3c5b814809a90b6ae91a.nii.gz

SWU_4/sub-0025853/ses-2/mri/wj_sub-0025853_ses-2_run-1_T1w.nii.gz

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