[DATALAD RUNCMD] Compute BNU_1/sub-0025866/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025866/ses-2/anat/sub-0025866_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025866/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025866/ses-2/label/catROI_sub-0025866_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/GX/MD5E-s61315--b0295815b37549950cc4f7c6cf2cb064.mat/MD5E-s61315--b0295815b37549950cc4f7c6cf2cb064.mat

BNU_1/sub-0025866/ses-2/label/catROI_sub-0025866_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PV/6Z/MD5E-s189031--2acede4263eb5da6e9e55b6819d90dc5.xml/MD5E-s189031--2acede4263eb5da6e9e55b6819d90dc5.xml

BNU_1/sub-0025866/ses-2/label/catROIs_sub-0025866_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/P5/MD5E-s120106--aff99d515fa39dce4e0a45daf01f8391.mat/MD5E-s120106--aff99d515fa39dce4e0a45daf01f8391.mat

BNU_1/sub-0025866/ses-2/label/catROIs_sub-0025866_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g8/Pw/MD5E-s332144--f25c7578494d2b67473b51905f21c8b9.xml/MD5E-s332144--f25c7578494d2b67473b51905f21c8b9.xml

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/K7/MD5E-s145052--ed753552e1c54724c2036dcacee635b0.nii.gz/MD5E-s145052--ed753552e1c54724c2036dcacee635b0.nii.gz

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qX/QV/MD5E-s164602--29aa0b05d0435afdf834e2a6e5c0b73b.nii.gz/MD5E-s164602--29aa0b05d0435afdf834e2a6e5c0b73b.nii.gz

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/zv/MD5E-s221133--162112ebd7004ffe4106e4ce30c73dac.nii.gz/MD5E-s221133--162112ebd7004ffe4106e4ce30c73dac.nii.gz

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025866/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zf/76/MD5E-s245600--94c8e4b2b9c62898876af257babd4178.nii.gz/MD5E-s245600--94c8e4b2b9c62898876af257babd4178.nii.gz

BNU_1/sub-0025866/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025866/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/KK/MD5E-s21080--bc7d2f515e9f9c83d4ddfec3c77e634f.nii.gz/MD5E-s21080--bc7d2f515e9f9c83d4ddfec3c77e634f.nii.gz

BNU_1/sub-0025866/ses-2/mri/aal3_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025866/ses-2/mri/aal3_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/8q/MD5E-s168460--cae473d1e76baef65daa1806ee29d564.nii.gz/MD5E-s168460--cae473d1e76baef65daa1806ee29d564.nii.gz

BNU_1/sub-0025866/ses-2/mri/anatomy3_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025866/ses-2/mri/anatomy3_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/50/MD5E-s116255--e3c1c72bb1fda05f57105da09900d7af.nii.gz/MD5E-s116255--e3c1c72bb1fda05f57105da09900d7af.nii.gz

BNU_1/sub-0025866/ses-2/mri/anon_misub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/2J/MD5E-s4005663--9f130b208ee52bb68a0b87cedc9e882a.nii.gz/MD5E-s4005663--9f130b208ee52bb68a0b87cedc9e882a.nii.gz

BNU_1/sub-0025866/ses-2/mri/anon_msub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XP/2x/MD5E-s7446445--4bbb1af588fa947a08afe860e79cf6f6.nii.gz/MD5E-s7446445--4bbb1af588fa947a08afe860e79cf6f6.nii.gz

BNU_1/sub-0025866/ses-2/mri/cat_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/1g/MD5E-s91886--2139fee109247ec4f0ab8bc3a62d6394.nii.gz/MD5E-s91886--2139fee109247ec4f0ab8bc3a62d6394.nii.gz

BNU_1/sub-0025866/ses-2/mri/cobra_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025866/ses-2/mri/cobra_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/P0/MD5E-s42020--eb79a39a4c168b72912b9d1523ce4c33.nii.gz/MD5E-s42020--eb79a39a4c168b72912b9d1523ce4c33.nii.gz

BNU_1/sub-0025866/ses-2/mri/hammers_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025866/ses-2/mri/hammers_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/87/MD5E-s132271--a74687e34d3a1455b4d6f698ad2eba71.nii.gz/MD5E-s132271--a74687e34d3a1455b4d6f698ad2eba71.nii.gz

BNU_1/sub-0025866/ses-2/mri/ibsr_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025866/ses-2/mri/ibsr_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/qp/MD5E-s138978--69942150c3b42b23bb2330a01ece1192.nii.gz/MD5E-s138978--69942150c3b42b23bb2330a01ece1192.nii.gz

BNU_1/sub-0025866/ses-2/mri/it_sub-0025866_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/G1/MD5E-s284--8b3cc2d31a72a3db3c26b3a1e1f53df6.mat/MD5E-s284--8b3cc2d31a72a3db3c26b3a1e1f53df6.mat

BNU_1/sub-0025866/ses-2/mri/it_sub-0025866_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/X8/MD5E-s284--85cc4a2bcc24860e5edd428c4f99cbfd.mat/MD5E-s284--85cc4a2bcc24860e5edd428c4f99cbfd.mat

BNU_1/sub-0025866/ses-2/mri/iy_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/wq/MD5E-s36862450--9d48121f57a87792748430ccfbd06c1c.nii.gz/MD5E-s36862450--9d48121f57a87792748430ccfbd06c1c.nii.gz

BNU_1/sub-0025866/ses-2/mri/julichbrain_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025866/ses-2/mri/julichbrain_sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/lpba40_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025866/ses-2/mri/lpba40_sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/m0wp1sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/2P/MD5E-s2588868--a1dbc7ea693c7c489caf523c105a5bb2.nii.gz/MD5E-s2588868--a1dbc7ea693c7c489caf523c105a5bb2.nii.gz

BNU_1/sub-0025866/ses-2/mri/m0wp2sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025866/ses-2/mri/m0wp3sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/Km/MD5E-s2539385--1b4a29cb883ea5f1737cb6d7346982d3.nii.gz/MD5E-s2539385--1b4a29cb883ea5f1737cb6d7346982d3.nii.gz

BNU_1/sub-0025866/ses-2/mri/mori_sub-0025866_ses-2_run-1_T1w.csv

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BNU_1/sub-0025866/ses-2/mri/mori_sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/mwp1sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/mwp2sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025866/ses-2/mri/mwp3sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/neuromorphometrics_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025866/ses-2/mri/neuromorphometrics_sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/p0sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/p1sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/p2sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/p3sub-0025866_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025866/ses-2/mri/rp1sub-0025866_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025866/ses-2/mri/rp2sub-0025866_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025866/ses-2/mri/rp3sub-0025866_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025866/ses-2/mri/t_sub-0025866_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025866/ses-2/mri/t_sub-0025866_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025866/ses-2/mri/thalamus_sub-0025866_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025866/ses-2/mri/thalamus_sub-0025866_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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