[DATALAD RUNCMD] Compute NYU_2/sub-0025008/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025008/ses-1/anat/sub-0025008_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025008/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025008/ses-1/label/catROI_sub-0025008_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/8K/MD5E-s57697--7b9d8080e65f7340ebe67ffaaf46377a.mat/MD5E-s57697--7b9d8080e65f7340ebe67ffaaf46377a.mat

NYU_2/sub-0025008/ses-1/label/catROI_sub-0025008_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/wQ/MD5E-s189030--c8de6c85e9d197dd9fb314f4903313b5.xml/MD5E-s189030--c8de6c85e9d197dd9fb314f4903313b5.xml

NYU_2/sub-0025008/ses-1/label/catROIs_sub-0025008_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/32/MD5E-s120434--bcc38828007739f95ed60f2dd5ce08c0.mat/MD5E-s120434--bcc38828007739f95ed60f2dd5ce08c0.mat

NYU_2/sub-0025008/ses-1/label/catROIs_sub-0025008_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/V9/MD5E-s332128--0a6100087002ff9c6b1b0c02af243ed4.xml/MD5E-s332128--0a6100087002ff9c6b1b0c02af243ed4.xml

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/07/MD5E-s139807--19e805f9c93047ed037c0b22a6997374.nii.gz/MD5E-s139807--19e805f9c93047ed037c0b22a6997374.nii.gz

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/qp/MD5E-s156450--a1226a113e9078fbe67e72331241d005.nii.gz/MD5E-s156450--a1226a113e9078fbe67e72331241d005.nii.gz

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/83/J4/MD5E-s210713--ab3032c89f45df6dcf0fae2de0735b5f.nii.gz/MD5E-s210713--ab3032c89f45df6dcf0fae2de0735b5f.nii.gz

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025008/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Z/MM/MD5E-s233422--f17cbfb386723c6bcef29beeee524412.nii.gz/MD5E-s233422--f17cbfb386723c6bcef29beeee524412.nii.gz

NYU_2/sub-0025008/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025008/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/Zf/MD5E-s19017--f906f72034b9949793698f9aeb31229b.nii.gz/MD5E-s19017--f906f72034b9949793698f9aeb31229b.nii.gz

NYU_2/sub-0025008/ses-1/mri/aal3_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025008/ses-1/mri/aal3_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/PZ/MD5E-s157259--b7b4ed9e6ca7aebb5525ef1eb9fcdaac.nii.gz/MD5E-s157259--b7b4ed9e6ca7aebb5525ef1eb9fcdaac.nii.gz

NYU_2/sub-0025008/ses-1/mri/anatomy3_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025008/ses-1/mri/anatomy3_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/k7/MD5E-s112334--cceaebb1ed557161c8ff27909d1822d1.nii.gz/MD5E-s112334--cceaebb1ed557161c8ff27909d1822d1.nii.gz

NYU_2/sub-0025008/ses-1/mri/anon_misub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/Q8/MD5E-s3174222--c8669cbbbe72e5ee8b20bbe466a36200.nii.gz/MD5E-s3174222--c8669cbbbe72e5ee8b20bbe466a36200.nii.gz

NYU_2/sub-0025008/ses-1/mri/anon_msub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vz/4W/MD5E-s9740012--0fb5113b61135c94cc54b8da29c888b8.nii.gz/MD5E-s9740012--0fb5113b61135c94cc54b8da29c888b8.nii.gz

NYU_2/sub-0025008/ses-1/mri/cat_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5X/vF/MD5E-s82714--59d8770bc4e00311fe47778b84525a70.nii.gz/MD5E-s82714--59d8770bc4e00311fe47778b84525a70.nii.gz

NYU_2/sub-0025008/ses-1/mri/cobra_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025008/ses-1/mri/cobra_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/0v/MD5E-s38361--67cab397e6736bd83440ec5cd7c72bba.nii.gz/MD5E-s38361--67cab397e6736bd83440ec5cd7c72bba.nii.gz

NYU_2/sub-0025008/ses-1/mri/hammers_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025008/ses-1/mri/hammers_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z4/Xj/MD5E-s122071--d3a38cc0977c91f64c8d9dd4a206982f.nii.gz/MD5E-s122071--d3a38cc0977c91f64c8d9dd4a206982f.nii.gz

NYU_2/sub-0025008/ses-1/mri/ibsr_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025008/ses-1/mri/ibsr_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/06/MD5E-s127246--05fc4d7592e5e7a2f65491ccedf64d7d.nii.gz/MD5E-s127246--05fc4d7592e5e7a2f65491ccedf64d7d.nii.gz

NYU_2/sub-0025008/ses-1/mri/it_sub-0025008_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/p6/MD5E-s283--18c665b7409688d30747e37cf717672f.mat/MD5E-s283--18c665b7409688d30747e37cf717672f.mat

NYU_2/sub-0025008/ses-1/mri/it_sub-0025008_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/M3/MD5E-s283--82e384f62dc99b43584ea7d69462dbbf.mat/MD5E-s283--82e384f62dc99b43584ea7d69462dbbf.mat

NYU_2/sub-0025008/ses-1/mri/iy_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5v/1g/MD5E-s30568172--9dea82743012f329a41764f4098a21dd.nii.gz/MD5E-s30568172--9dea82743012f329a41764f4098a21dd.nii.gz

NYU_2/sub-0025008/ses-1/mri/julichbrain_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025008/ses-1/mri/julichbrain_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/8v/MD5E-s164754--d7f3a4b03553720300e264d3accad623.nii.gz/MD5E-s164754--d7f3a4b03553720300e264d3accad623.nii.gz

NYU_2/sub-0025008/ses-1/mri/lpba40_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025008/ses-1/mri/lpba40_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/ZF/MD5E-s119064--8089f5cb142941926ebe62e8799621d4.nii.gz/MD5E-s119064--8089f5cb142941926ebe62e8799621d4.nii.gz

NYU_2/sub-0025008/ses-1/mri/m0wp1sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/vg/MD5E-s2602813--dfac56f25d64eacc595010c882f7b2d4.nii.gz/MD5E-s2602813--dfac56f25d64eacc595010c882f7b2d4.nii.gz

NYU_2/sub-0025008/ses-1/mri/m0wp2sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qz/Gw/MD5E-s2257554--d003bd2d825248ff97c5c5b4b6a2074e.nii.gz/MD5E-s2257554--d003bd2d825248ff97c5c5b4b6a2074e.nii.gz

NYU_2/sub-0025008/ses-1/mri/m0wp3sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/zw/MD5E-s2199813--3f848fa8f2c2d9e5545a1093dc759bdb.nii.gz/MD5E-s2199813--3f848fa8f2c2d9e5545a1093dc759bdb.nii.gz

NYU_2/sub-0025008/ses-1/mri/mori_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025008/ses-1/mri/mori_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/kZ/MD5E-s143907--92411771b2aae97ba7089448dfdeb74d.nii.gz/MD5E-s143907--92411771b2aae97ba7089448dfdeb74d.nii.gz

NYU_2/sub-0025008/ses-1/mri/mwp1sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/g4/MD5E-s2608146--a3719e6ebabd56bcce98d5b37d0d28ba.nii.gz/MD5E-s2608146--a3719e6ebabd56bcce98d5b37d0d28ba.nii.gz

NYU_2/sub-0025008/ses-1/mri/mwp2sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/PK/MD5E-s2261569--5f85e2431ffe4134607eec3ff1d53c8f.nii.gz/MD5E-s2261569--5f85e2431ffe4134607eec3ff1d53c8f.nii.gz

NYU_2/sub-0025008/ses-1/mri/mwp3sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5M/8V/MD5E-s2196077--179082c164d12180976ead302f80beb2.nii.gz/MD5E-s2196077--179082c164d12180976ead302f80beb2.nii.gz

NYU_2/sub-0025008/ses-1/mri/neuromorphometrics_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025008/ses-1/mri/neuromorphometrics_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/M7/MD5E-s166877--45b3529750960e600d895525b7be1fc5.nii.gz/MD5E-s166877--45b3529750960e600d895525b7be1fc5.nii.gz

NYU_2/sub-0025008/ses-1/mri/p0sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/wP/MD5E-s623659--f7161912b2f094ccfeac33e9bb71efe2.nii.gz/MD5E-s623659--f7161912b2f094ccfeac33e9bb71efe2.nii.gz

NYU_2/sub-0025008/ses-1/mri/p1sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/29/MD5E-s652820--10b3cbfb63cbf728d2e277e0a4983f02.nii.gz/MD5E-s652820--10b3cbfb63cbf728d2e277e0a4983f02.nii.gz

NYU_2/sub-0025008/ses-1/mri/p2sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/MZ/MD5E-s471742--6b9897a3fab5ddb91fef71ea310e9fba.nii.gz/MD5E-s471742--6b9897a3fab5ddb91fef71ea310e9fba.nii.gz

NYU_2/sub-0025008/ses-1/mri/p3sub-0025008_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/1k/9j/MD5E-s317847--e8e68873a2f35cb418c8cc37e836e55b.nii.gz/MD5E-s317847--e8e68873a2f35cb418c8cc37e836e55b.nii.gz

NYU_2/sub-0025008/ses-1/mri/rp1sub-0025008_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/zJ/MD5E-s446166--1fac0ccbb85b970d33db1e7676278428.nii.gz/MD5E-s446166--1fac0ccbb85b970d33db1e7676278428.nii.gz

NYU_2/sub-0025008/ses-1/mri/rp2sub-0025008_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025008/ses-1/mri/rp3sub-0025008_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025008/ses-1/mri/t_sub-0025008_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025008/ses-1/mri/t_sub-0025008_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/gf/MD5E-s283--96602ab0c5c87d01b7015df04142af3f.mat/MD5E-s283--96602ab0c5c87d01b7015df04142af3f.mat

NYU_2/sub-0025008/ses-1/mri/thalamus_sub-0025008_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

NYU_2/sub-0025008/ses-1/mri/thalamus_sub-0025008_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/79/vP/MD5E-s12405--1b1e9bb0dd961e9a8c9cdcbca82ddb28.nii.gz/MD5E-s12405--1b1e9bb0dd961e9a8c9cdcbca82ddb28.nii.gz

NYU_2/sub-0025008/ses-1/mri/wj_sub-0025008_ses-1_run-1_T1w.nii.gz

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