[DATALAD RUNCMD] Compute SWU_4/sub-0025802/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025802/ses-1/anat/sub-0025802_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025802/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025802/ses-1/label/catROI_sub-0025802_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/VV/MD5E-s58306--9035cf47f904466ab129a6d1ef8bd4c9.mat/MD5E-s58306--9035cf47f904466ab129a6d1ef8bd4c9.mat

SWU_4/sub-0025802/ses-1/label/catROI_sub-0025802_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/Kk/MD5E-s188533--189e6dc093b830a623349facb28789be.xml/MD5E-s188533--189e6dc093b830a623349facb28789be.xml

SWU_4/sub-0025802/ses-1/label/catROIs_sub-0025802_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/m7/MD5E-s120053--65930d2bd2495df96827308d7053126a.mat/MD5E-s120053--65930d2bd2495df96827308d7053126a.mat

SWU_4/sub-0025802/ses-1/label/catROIs_sub-0025802_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/Kg/MD5E-s332163--4e8757f60503947f0e63fbac69c2f3ed.xml/MD5E-s332163--4e8757f60503947f0e63fbac69c2f3ed.xml

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/qx/MD5E-s188142--d4b6e9e45b15a8d285e308fb5114ecbc.nii.gz/MD5E-s188142--d4b6e9e45b15a8d285e308fb5114ecbc.nii.gz

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/vf/MD5E-s213396--2e27fd51efc7ea70b6af4fb0506926c9.nii.gz/MD5E-s213396--2e27fd51efc7ea70b6af4fb0506926c9.nii.gz

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fg/j5/MD5E-s285422--fd24f3bb68fdd163edfe35573db2b8b8.nii.gz/MD5E-s285422--fd24f3bb68fdd163edfe35573db2b8b8.nii.gz

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025802/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/ZM/MD5E-s318778--4815363db000d7d965b0077f74dea86b.nii.gz/MD5E-s318778--4815363db000d7d965b0077f74dea86b.nii.gz

SWU_4/sub-0025802/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025802/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/5m/MD5E-s26804--8ae7e369491b655af49855d05d387fc6.nii.gz/MD5E-s26804--8ae7e369491b655af49855d05d387fc6.nii.gz

SWU_4/sub-0025802/ses-1/mri/aal3_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025802/ses-1/mri/aal3_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/58/MD5E-s215849--0d85f7d05540fe8805fa0b9f1624e776.nii.gz/MD5E-s215849--0d85f7d05540fe8805fa0b9f1624e776.nii.gz

SWU_4/sub-0025802/ses-1/mri/anatomy3_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025802/ses-1/mri/anatomy3_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/jG/MD5E-s155359--3216a7c68d56bad8af4da8a8fe706a56.nii.gz/MD5E-s155359--3216a7c68d56bad8af4da8a8fe706a56.nii.gz

SWU_4/sub-0025802/ses-1/mri/anon_misub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pz/fg/MD5E-s12004999--89615f9904eb32a17eb624f62195b653.nii.gz/MD5E-s12004999--89615f9904eb32a17eb624f62195b653.nii.gz

SWU_4/sub-0025802/ses-1/mri/anon_msub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/q9/MD5E-s12783753--552b429fb0229c1878d88828d8d1f3da.nii.gz/MD5E-s12783753--552b429fb0229c1878d88828d8d1f3da.nii.gz

SWU_4/sub-0025802/ses-1/mri/cat_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/xZ/MD5E-s116656--56356c525cf25f0e6264ee19c76cd167.nii.gz/MD5E-s116656--56356c525cf25f0e6264ee19c76cd167.nii.gz

SWU_4/sub-0025802/ses-1/mri/cobra_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025802/ses-1/mri/cobra_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/Fv/MD5E-s53819--6266769b821f7eeb3b4babf9f2fbaac8.nii.gz/MD5E-s53819--6266769b821f7eeb3b4babf9f2fbaac8.nii.gz

SWU_4/sub-0025802/ses-1/mri/hammers_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025802/ses-1/mri/hammers_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/6g/MD5E-s167611--9c07d63e8e641bbcf7540a1daa76665b.nii.gz/MD5E-s167611--9c07d63e8e641bbcf7540a1daa76665b.nii.gz

SWU_4/sub-0025802/ses-1/mri/ibsr_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025802/ses-1/mri/ibsr_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/j6/MD5E-s177700--b57675253384645dae4f2fbb727dd46c.nii.gz/MD5E-s177700--b57675253384645dae4f2fbb727dd46c.nii.gz

SWU_4/sub-0025802/ses-1/mri/it_sub-0025802_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/z2/MD5E-s282--50056c78fd4e30ee7a32368696c2952b.mat/MD5E-s282--50056c78fd4e30ee7a32368696c2952b.mat

SWU_4/sub-0025802/ses-1/mri/it_sub-0025802_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/1W/MD5E-s283--9c5c7b11a62a009f3c09eec7f5cbedfe.mat/MD5E-s283--9c5c7b11a62a009f3c09eec7f5cbedfe.mat

SWU_4/sub-0025802/ses-1/mri/iy_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pw/W6/MD5E-s55571103--693762adafd5eee4b0c98f8216754583.nii.gz/MD5E-s55571103--693762adafd5eee4b0c98f8216754583.nii.gz

SWU_4/sub-0025802/ses-1/mri/julichbrain_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025802/ses-1/mri/julichbrain_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/kF/MD5E-s228497--b75acd61c4309940f68467366a3b31d3.nii.gz/MD5E-s228497--b75acd61c4309940f68467366a3b31d3.nii.gz

SWU_4/sub-0025802/ses-1/mri/lpba40_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025802/ses-1/mri/lpba40_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/gw/MD5E-s164141--7d7d3736505a346584f85408b6570733.nii.gz/MD5E-s164141--7d7d3736505a346584f85408b6570733.nii.gz

SWU_4/sub-0025802/ses-1/mri/m0wp1sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1P/23/MD5E-s2579288--00227466dd3dca1b63db3b60a055457a.nii.gz/MD5E-s2579288--00227466dd3dca1b63db3b60a055457a.nii.gz

SWU_4/sub-0025802/ses-1/mri/m0wp2sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zq/79/MD5E-s2334664--f000174bad2c4bd62ac473d3bacf74ab.nii.gz/MD5E-s2334664--f000174bad2c4bd62ac473d3bacf74ab.nii.gz

SWU_4/sub-0025802/ses-1/mri/m0wp3sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/kj/MD5E-s2577777--97a8260108eaef36a0affde26b146c9f.nii.gz/MD5E-s2577777--97a8260108eaef36a0affde26b146c9f.nii.gz

SWU_4/sub-0025802/ses-1/mri/mori_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025802/ses-1/mri/mori_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/8m/MD5E-s197543--782dc0976aac0a0a350abf12ca9bb8ef.nii.gz/MD5E-s197543--782dc0976aac0a0a350abf12ca9bb8ef.nii.gz

SWU_4/sub-0025802/ses-1/mri/mwp1sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/fk/MD5E-s2577878--d483fd3c1f697851db0fae14f6938840.nii.gz/MD5E-s2577878--d483fd3c1f697851db0fae14f6938840.nii.gz

SWU_4/sub-0025802/ses-1/mri/mwp2sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/mg/MD5E-s2332190--198f15fde90ab0c8d2898267453e7506.nii.gz/MD5E-s2332190--198f15fde90ab0c8d2898267453e7506.nii.gz

SWU_4/sub-0025802/ses-1/mri/mwp3sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/30/MD5E-s2574285--dcff9471366b7c3202c018bd86e06efc.nii.gz/MD5E-s2574285--dcff9471366b7c3202c018bd86e06efc.nii.gz

SWU_4/sub-0025802/ses-1/mri/neuromorphometrics_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025802/ses-1/mri/neuromorphometrics_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qx/FK/MD5E-s229505--0ea0271f9afd214ce7e10d69ad8362a4.nii.gz/MD5E-s229505--0ea0271f9afd214ce7e10d69ad8362a4.nii.gz

SWU_4/sub-0025802/ses-1/mri/p0sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/vq/MD5E-s792756--2ecd9c20fc7b4d32036802377b7862de.nii.gz/MD5E-s792756--2ecd9c20fc7b4d32036802377b7862de.nii.gz

SWU_4/sub-0025802/ses-1/mri/p1sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/fM/MD5E-s836787--7513b3849bd153d8d77d36185189b63b.nii.gz/MD5E-s836787--7513b3849bd153d8d77d36185189b63b.nii.gz

SWU_4/sub-0025802/ses-1/mri/p2sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/QJ/MD5E-s556457--646fa219f4ba2ccdf742873d4fdca364.nii.gz/MD5E-s556457--646fa219f4ba2ccdf742873d4fdca364.nii.gz

SWU_4/sub-0025802/ses-1/mri/p3sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/ZJ/MD5E-s477857--9133f5209bb02288fdb1f2ce54b41067.nii.gz/MD5E-s477857--9133f5209bb02288fdb1f2ce54b41067.nii.gz

SWU_4/sub-0025802/ses-1/mri/rp1sub-0025802_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7q/f4/MD5E-s465816--d92138ccbca77c48b47e0118253baea1.nii.gz/MD5E-s465816--d92138ccbca77c48b47e0118253baea1.nii.gz

SWU_4/sub-0025802/ses-1/mri/rp2sub-0025802_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/JK/MD5E-s326002--ae42fd18bf02d48aaff9e972520b8e44.nii.gz/MD5E-s326002--ae42fd18bf02d48aaff9e972520b8e44.nii.gz

SWU_4/sub-0025802/ses-1/mri/rp3sub-0025802_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/4Z/MD5E-s305402--c97db1921510e3fb2536d4295a1609d7.nii.gz/MD5E-s305402--c97db1921510e3fb2536d4295a1609d7.nii.gz

SWU_4/sub-0025802/ses-1/mri/t_sub-0025802_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/V8/MD5E-s283--5456b735ad6a7f213c2b747b8683dd24.mat/MD5E-s283--5456b735ad6a7f213c2b747b8683dd24.mat

SWU_4/sub-0025802/ses-1/mri/t_sub-0025802_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/jv/MD5E-s283--088413f7dc14cddec9efcf6b8ee40004.mat/MD5E-s283--088413f7dc14cddec9efcf6b8ee40004.mat

SWU_4/sub-0025802/ses-1/mri/thalamus_sub-0025802_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025802/ses-1/mri/thalamus_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m7/1G/MD5E-s17002--cb0f28d359df309d87ddf422a49bfd86.nii.gz/MD5E-s17002--cb0f28d359df309d87ddf422a49bfd86.nii.gz

SWU_4/sub-0025802/ses-1/mri/wj_sub-0025802_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/6j/MD5E-s5615309--505d8d00b183f405eff8247df5255c97.nii.gz/MD5E-s5615309--505d8d00b183f405eff8247df5255c97.nii.gz

SWU_4/sub-0025802/ses-1/mri/wmisub-0025802_ses-1_run-1_T1w.nii.gz

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