[DATALAD RUNCMD] Compute NYU_2/sub-0025107/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025107/ses-1/anat/sub-0025107_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025107/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025107/ses-1/label/catROI_sub-0025107_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/37/MD5E-s58053--2e8cc598ae98b6609bdf8832228d6d61.mat/MD5E-s58053--2e8cc598ae98b6609bdf8832228d6d61.mat

NYU_2/sub-0025107/ses-1/label/catROI_sub-0025107_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/6k/MD5E-s188651--d7db4c78b77a4d7a5f9be7aac8e970c9.xml/MD5E-s188651--d7db4c78b77a4d7a5f9be7aac8e970c9.xml

NYU_2/sub-0025107/ses-1/label/catROI_sub-0025107_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Z5/xP/MD5E-s58006--2abd35074ee8c1be74f9452d37e5ac6d.mat/MD5E-s58006--2abd35074ee8c1be74f9452d37e5ac6d.mat

NYU_2/sub-0025107/ses-1/label/catROI_sub-0025107_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2V/4x/MD5E-s188681--9ee4def10e999ce768410a0573baa5e1.xml/MD5E-s188681--9ee4def10e999ce768410a0573baa5e1.xml

NYU_2/sub-0025107/ses-1/label/catROIs_sub-0025107_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/xm/MD5E-s120282--38cf51ed37ea2ed807b2b9d2056ad14a.mat/MD5E-s120282--38cf51ed37ea2ed807b2b9d2056ad14a.mat

NYU_2/sub-0025107/ses-1/label/catROIs_sub-0025107_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/k7/MD5E-s332222--473feffb2732bc72bcc76e5423e01449.xml/MD5E-s332222--473feffb2732bc72bcc76e5423e01449.xml

NYU_2/sub-0025107/ses-1/label/catROIs_sub-0025107_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/j7/1Z/MD5E-s120267--9019396a2f0337e40f5802381b389e1d.mat/MD5E-s120267--9019396a2f0337e40f5802381b389e1d.mat

NYU_2/sub-0025107/ses-1/label/catROIs_sub-0025107_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/20/Xk/MD5E-s332155--43fe8875aecfce27df4bbd20a5736c27.xml/MD5E-s332155--43fe8875aecfce27df4bbd20a5736c27.xml

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/V5/MD5E-s152172--f7d7448cc831772bc6dbb3679de56d1f.nii.gz/MD5E-s152172--f7d7448cc831772bc6dbb3679de56d1f.nii.gz

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4z/Q8/MD5E-s151676--685026f822ce98e60ad1c231b5d1e1cc.nii.gz/MD5E-s151676--685026f822ce98e60ad1c231b5d1e1cc.nii.gz

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jq/Pk/MD5E-s169183--965045d9f4d1328a929588633072cedf.nii.gz/MD5E-s169183--965045d9f4d1328a929588633072cedf.nii.gz

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mg/52/MD5E-s168455--6dd548d3c2c201440528307a1ae28149.nii.gz/MD5E-s168455--6dd548d3c2c201440528307a1ae28149.nii.gz

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/Qg/MD5E-s227659--871a621f8ef544399d0df1bffb0b96a6.nii.gz/MD5E-s227659--871a621f8ef544399d0df1bffb0b96a6.nii.gz

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/64/Xz/MD5E-s227135--04a1793451def45735e135a5ea25b09c.nii.gz/MD5E-s227135--04a1793451def45735e135a5ea25b09c.nii.gz

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Z/WF/MD5E-s253721--87ab80bde6c7ca897253777f61471484.nii.gz/MD5E-s253721--87ab80bde6c7ca897253777f61471484.nii.gz

NYU_2/sub-0025107/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0W/8j/MD5E-s252656--b49ee70f797fb63cc9e147009baa43f5.nii.gz/MD5E-s252656--b49ee70f797fb63cc9e147009baa43f5.nii.gz

NYU_2/sub-0025107/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/pg/MD5E-s19322--d04eeb28c8a06ef0ca1b2a199a2a76d3.nii.gz/MD5E-s19322--d04eeb28c8a06ef0ca1b2a199a2a76d3.nii.gz

NYU_2/sub-0025107/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kW/GW/MD5E-s19268--7d268e87e34e2c3b4a4a84f6d6e40e68.nii.gz/MD5E-s19268--7d268e87e34e2c3b4a4a84f6d6e40e68.nii.gz

NYU_2/sub-0025107/ses-1/mri/aal3_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/KZ/MD5E-s171964--9d0559527d91fec5ffae81fb0f3e7fb6.nii.gz/MD5E-s171964--9d0559527d91fec5ffae81fb0f3e7fb6.nii.gz

NYU_2/sub-0025107/ses-1/mri/aal3_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wJ/f1/MD5E-s171618--6db9b4d919800a690c5bbfcae8bd7700.nii.gz/MD5E-s171618--6db9b4d919800a690c5bbfcae8bd7700.nii.gz

NYU_2/sub-0025107/ses-1/mri/anatomy3_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WW/K1/MD5E-s122940--82f114c5a993f08b6fc5c531294d4bef.nii.gz/MD5E-s122940--82f114c5a993f08b6fc5c531294d4bef.nii.gz

NYU_2/sub-0025107/ses-1/mri/anatomy3_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3x/kG/MD5E-s123150--e4cbd22011c6ea54d200a96512e7ea80.nii.gz/MD5E-s123150--e4cbd22011c6ea54d200a96512e7ea80.nii.gz

NYU_2/sub-0025107/ses-1/mri/anon_misub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/x2/MD5E-s3841225--fb57bfb5cf0de678eed68a97b883f145.nii.gz/MD5E-s3841225--fb57bfb5cf0de678eed68a97b883f145.nii.gz

NYU_2/sub-0025107/ses-1/mri/anon_misub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0Q/09/MD5E-s3818171--c2b9d4e5494abe26ffd8832906ab965d.nii.gz/MD5E-s3818171--c2b9d4e5494abe26ffd8832906ab965d.nii.gz

NYU_2/sub-0025107/ses-1/mri/anon_msub-0025107_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/M0/gk/MD5E-s9679914--b443f17f44ca6568ebf4f7de54651d3f.nii.gz/MD5E-s9679914--b443f17f44ca6568ebf4f7de54651d3f.nii.gz

NYU_2/sub-0025107/ses-1/mri/anon_msub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mw/7f/MD5E-s9533426--f5d49f0e549934860e92f8efdc6b94ff.nii.gz/MD5E-s9533426--f5d49f0e549934860e92f8efdc6b94ff.nii.gz

NYU_2/sub-0025107/ses-1/mri/cat_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wg/57/MD5E-s89917--c4a9a53cad77351c7519040a6abd0648.nii.gz/MD5E-s89917--c4a9a53cad77351c7519040a6abd0648.nii.gz

NYU_2/sub-0025107/ses-1/mri/cat_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kz/F8/MD5E-s89778--2f1c86435c69bc510859ca19bd3166e3.nii.gz/MD5E-s89778--2f1c86435c69bc510859ca19bd3166e3.nii.gz

NYU_2/sub-0025107/ses-1/mri/cobra_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/f4/MD5E-s42194--61fcc3e4d56c79690d233895849100bb.nii.gz/MD5E-s42194--61fcc3e4d56c79690d233895849100bb.nii.gz

NYU_2/sub-0025107/ses-1/mri/cobra_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025107/ses-1/mri/hammers_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vg/6Z/MD5E-s133703--0a56bee89d3cca6dbbdb68ed8d88ab26.nii.gz/MD5E-s133703--0a56bee89d3cca6dbbdb68ed8d88ab26.nii.gz

NYU_2/sub-0025107/ses-1/mri/hammers_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025107/ses-1/mri/ibsr_sub-0025107_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/j2/MD5E-s141874--da42e939b02e73334609bbc45b96065e.nii.gz/MD5E-s141874--da42e939b02e73334609bbc45b96065e.nii.gz

NYU_2/sub-0025107/ses-1/mri/ibsr_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025107/ses-1/mri/it_sub-0025107_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f5/VZ/MD5E-s283--f07c2a750e4086e03aa40d6fc422743a.mat/MD5E-s283--f07c2a750e4086e03aa40d6fc422743a.mat

NYU_2/sub-0025107/ses-1/mri/it_sub-0025107_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025107/ses-1/mri/it_sub-0025107_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wF/3j/MD5E-s283--1d733a5f6465841385ab84c546886140.mat/MD5E-s283--1d733a5f6465841385ab84c546886140.mat

NYU_2/sub-0025107/ses-1/mri/it_sub-0025107_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025107/ses-1/mri/iy_sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/iy_sub-0025107_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/julichbrain_sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/julichbrain_sub-0025107_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/lpba40_sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/lpba40_sub-0025107_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025107/ses-1/mri/m0wp1sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/m0wp1sub-0025107_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/m0wp2sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/m0wp2sub-0025107_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/m0wp3sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/m0wp3sub-0025107_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/mori_sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/mori_sub-0025107_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/mwp1sub-0025107_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/mwp1sub-0025107_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025107/ses-1/mri/mwp2sub-0025107_ses-1_run-1_T1w.nii.gz

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