[DATALAD RUNCMD] Compute BMB_1/sub-0003001/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003001/ses-1/anat/sub-0003001_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003001/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003001/ses-1/label/catROI_sub-0003001_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/PK/MD5E-s57895--63218174dfa0d28430ae564756128838.mat/MD5E-s57895--63218174dfa0d28430ae564756128838.mat

BMB_1/sub-0003001/ses-1/label/catROI_sub-0003001_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/WQ/MD5E-s188819--0a763535080aab3861a1dc31b0275319.xml/MD5E-s188819--0a763535080aab3861a1dc31b0275319.xml

BMB_1/sub-0003001/ses-1/label/catROIs_sub-0003001_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/ZV/MD5E-s120083--23395ad42c53402757c42195dfc5f2ce.mat/MD5E-s120083--23395ad42c53402757c42195dfc5f2ce.mat

BMB_1/sub-0003001/ses-1/label/catROIs_sub-0003001_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/3z/MD5E-s332086--ada7e79034df7d948327e6a50350c227.xml/MD5E-s332086--ada7e79034df7d948327e6a50350c227.xml

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XP/Jw/MD5E-s171231--c8425bb193da00d54c1a9f61e3db2293.nii.gz/MD5E-s171231--c8425bb193da00d54c1a9f61e3db2293.nii.gz

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2x/w3/MD5E-s192079--2b22314d5b34bd349fb93cadeb5b0b12.nii.gz/MD5E-s192079--2b22314d5b34bd349fb93cadeb5b0b12.nii.gz

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/5J/MD5E-s260603--6a455a1736c8f7c5fc65e09d8e1ab7d4.nii.gz/MD5E-s260603--6a455a1736c8f7c5fc65e09d8e1ab7d4.nii.gz

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003001/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/Jz/MD5E-s290424--8b50d9eb53e32fa8dc5cad1119a0d34a.nii.gz/MD5E-s290424--8b50d9eb53e32fa8dc5cad1119a0d34a.nii.gz

BMB_1/sub-0003001/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003001/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/QX/MD5E-s24510--9cf94a35004f07d89570e75d45687aa6.nii.gz/MD5E-s24510--9cf94a35004f07d89570e75d45687aa6.nii.gz

BMB_1/sub-0003001/ses-1/mri/aal3_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003001/ses-1/mri/aal3_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fx/Ff/MD5E-s195338--50816b81c5358ec81a25660b8fde2115.nii.gz/MD5E-s195338--50816b81c5358ec81a25660b8fde2115.nii.gz

BMB_1/sub-0003001/ses-1/mri/anatomy3_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003001/ses-1/mri/anatomy3_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/fv/MD5E-s141264--33115b109305bea795e45de83488fe3d.nii.gz/MD5E-s141264--33115b109305bea795e45de83488fe3d.nii.gz

BMB_1/sub-0003001/ses-1/mri/anon_misub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/gQ/MD5E-s6046861--c156a8c66594a4091e5b0fde61a61f51.nii.gz/MD5E-s6046861--c156a8c66594a4091e5b0fde61a61f51.nii.gz

BMB_1/sub-0003001/ses-1/mri/anon_msub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/xm/MD5E-s12703636--a95b6af00a793136138d557ff3a96add.nii.gz/MD5E-s12703636--a95b6af00a793136138d557ff3a96add.nii.gz

BMB_1/sub-0003001/ses-1/mri/cat_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/KP/MD5E-s105857--4fbda48ec19f8f1728d899b3856a9794.nii.gz/MD5E-s105857--4fbda48ec19f8f1728d899b3856a9794.nii.gz

BMB_1/sub-0003001/ses-1/mri/cobra_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003001/ses-1/mri/cobra_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WJ/MF/MD5E-s50747--c53c44084cfedef49788ad5a1ecee996.nii.gz/MD5E-s50747--c53c44084cfedef49788ad5a1ecee996.nii.gz

BMB_1/sub-0003001/ses-1/mri/hammers_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003001/ses-1/mri/hammers_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5j/GV/MD5E-s152990--940671a024165fccfb320f111448de93.nii.gz/MD5E-s152990--940671a024165fccfb320f111448de93.nii.gz

BMB_1/sub-0003001/ses-1/mri/ibsr_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003001/ses-1/mri/ibsr_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/0V/MD5E-s161138--abf5bd23db340c27ecbc8938dcedb9ab.nii.gz/MD5E-s161138--abf5bd23db340c27ecbc8938dcedb9ab.nii.gz

BMB_1/sub-0003001/ses-1/mri/it_sub-0003001_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/80/MD5E-s282--8b7cd63f0d41eed10a9c142c3d89c20c.mat/MD5E-s282--8b7cd63f0d41eed10a9c142c3d89c20c.mat

BMB_1/sub-0003001/ses-1/mri/it_sub-0003001_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/66/82/MD5E-s283--5129102151d5acc2f74efc9ab6673d3b.mat/MD5E-s283--5129102151d5acc2f74efc9ab6673d3b.mat

BMB_1/sub-0003001/ses-1/mri/iy_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/FQ/MD5E-s48954973--3ff0f01f603f45a527f8c3f93633a612.nii.gz/MD5E-s48954973--3ff0f01f603f45a527f8c3f93633a612.nii.gz

BMB_1/sub-0003001/ses-1/mri/julichbrain_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003001/ses-1/mri/julichbrain_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/6F/MD5E-s206538--333ce2a17b17b2ad258b5e1925a0985e.nii.gz/MD5E-s206538--333ce2a17b17b2ad258b5e1925a0985e.nii.gz

BMB_1/sub-0003001/ses-1/mri/lpba40_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003001/ses-1/mri/lpba40_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/WQ/MD5E-s150372--d71dfd7af3f4130e459069135ca89590.nii.gz/MD5E-s150372--d71dfd7af3f4130e459069135ca89590.nii.gz

BMB_1/sub-0003001/ses-1/mri/m0wp1sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PF/P9/MD5E-s2577353--5999540740e72e0ed00674d437db8e90.nii.gz/MD5E-s2577353--5999540740e72e0ed00674d437db8e90.nii.gz

BMB_1/sub-0003001/ses-1/mri/m0wp2sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/gq/MD5E-s2310096--723d9a50c32ba718202c62e636683aeb.nii.gz/MD5E-s2310096--723d9a50c32ba718202c62e636683aeb.nii.gz

BMB_1/sub-0003001/ses-1/mri/m0wp3sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0v/8Z/MD5E-s2585663--374387bde721d5e90d00ae34c125a869.nii.gz/MD5E-s2585663--374387bde721d5e90d00ae34c125a869.nii.gz

BMB_1/sub-0003001/ses-1/mri/mori_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003001/ses-1/mri/mori_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/xQ/MD5E-s178535--408adff778485d8b6627c5b4084e754b.nii.gz/MD5E-s178535--408adff778485d8b6627c5b4084e754b.nii.gz

BMB_1/sub-0003001/ses-1/mri/mwp1sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/x4/MD5E-s2578063--58803dd280047c7257ab116abb91621f.nii.gz/MD5E-s2578063--58803dd280047c7257ab116abb91621f.nii.gz

BMB_1/sub-0003001/ses-1/mri/mwp2sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/3Z/MD5E-s2303756--0b036968326def3a54cc65dcb1092b61.nii.gz/MD5E-s2303756--0b036968326def3a54cc65dcb1092b61.nii.gz

BMB_1/sub-0003001/ses-1/mri/mwp3sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zj/X0/MD5E-s2582110--d16ddd5595ff15deee8b8efd1c8d05c1.nii.gz/MD5E-s2582110--d16ddd5595ff15deee8b8efd1c8d05c1.nii.gz

BMB_1/sub-0003001/ses-1/mri/neuromorphometrics_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003001/ses-1/mri/neuromorphometrics_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/k9/MD5E-s209232--31dbaf58ffd3f151fe3ae6657b7943fa.nii.gz/MD5E-s209232--31dbaf58ffd3f151fe3ae6657b7943fa.nii.gz

BMB_1/sub-0003001/ses-1/mri/p0sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/Jv/MD5E-s678914--8c95387b28026360ee98fa4f1930fc56.nii.gz/MD5E-s678914--8c95387b28026360ee98fa4f1930fc56.nii.gz

BMB_1/sub-0003001/ses-1/mri/p1sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/p1/MD5E-s714283--3eeaa299a24265ab38c1e5eeeac59c4a.nii.gz/MD5E-s714283--3eeaa299a24265ab38c1e5eeeac59c4a.nii.gz

BMB_1/sub-0003001/ses-1/mri/p2sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/85/MD5E-s457105--7255e13200d17a2f85e32e05ea310d55.nii.gz/MD5E-s457105--7255e13200d17a2f85e32e05ea310d55.nii.gz

BMB_1/sub-0003001/ses-1/mri/p3sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/Xp/MD5E-s429352--a49e80aced8827f6cde7c6ab11a6ee07.nii.gz/MD5E-s429352--a49e80aced8827f6cde7c6ab11a6ee07.nii.gz

BMB_1/sub-0003001/ses-1/mri/rp1sub-0003001_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/QV/MD5E-s449343--0a88e7ed0c380515b84433c748ffe698.nii.gz/MD5E-s449343--0a88e7ed0c380515b84433c748ffe698.nii.gz

BMB_1/sub-0003001/ses-1/mri/rp2sub-0003001_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/48/MD5E-s299425--1ef69270d4ffe91c1300e5cdc305c167.nii.gz/MD5E-s299425--1ef69270d4ffe91c1300e5cdc305c167.nii.gz

BMB_1/sub-0003001/ses-1/mri/rp3sub-0003001_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jQ/7X/MD5E-s305213--38a30d5c1b3f137d741d42969c47d3a2.nii.gz/MD5E-s305213--38a30d5c1b3f137d741d42969c47d3a2.nii.gz

BMB_1/sub-0003001/ses-1/mri/t_sub-0003001_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/PV/MD5E-s284--5fd67b5bd86a322553906de4b50fa150.mat/MD5E-s284--5fd67b5bd86a322553906de4b50fa150.mat

BMB_1/sub-0003001/ses-1/mri/t_sub-0003001_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/3Q/MD5E-s284--1069457e54d8cb796d9c2b5ebe936f18.mat/MD5E-s284--1069457e54d8cb796d9c2b5ebe936f18.mat

BMB_1/sub-0003001/ses-1/mri/thalamus_sub-0003001_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003001/ses-1/mri/thalamus_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fw/VZ/MD5E-s16496--16b8ad382f5f980247f2f9bf1c8a563b.nii.gz/MD5E-s16496--16b8ad382f5f980247f2f9bf1c8a563b.nii.gz

BMB_1/sub-0003001/ses-1/mri/wj_sub-0003001_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/7f/MD5E-s5492920--833c252ce4c3fa1c683c28362993da93.nii.gz/MD5E-s5492920--833c252ce4c3fa1c683c28362993da93.nii.gz

BMB_1/sub-0003001/ses-1/mri/wmisub-0003001_ses-1_run-1_T1w.nii.gz

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