[DATALAD RUNCMD] Compute IACAS/sub-0025464/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025464/ses-2/anat/sub-0025464_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025464/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025464/ses-2/label/catROI_sub-0025464_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9p/Px/MD5E-s58105--06befd166cdfd2d21201789546ff834a.mat/MD5E-s58105--06befd166cdfd2d21201789546ff834a.mat

IACAS/sub-0025464/ses-2/label/catROI_sub-0025464_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/Qj/MD5E-s188683--900270eba67c4dac891f6469871baae6.xml/MD5E-s188683--900270eba67c4dac891f6469871baae6.xml

IACAS/sub-0025464/ses-2/label/catROIs_sub-0025464_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/Z7/MD5E-s120075--bcd43be23acd36cf8a05d8a9ad66be8c.mat/MD5E-s120075--bcd43be23acd36cf8a05d8a9ad66be8c.mat

IACAS/sub-0025464/ses-2/label/catROIs_sub-0025464_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/q7/MD5E-s332113--c5ee64d2463f37aa1cadd06798745d30.xml/MD5E-s332113--c5ee64d2463f37aa1cadd06798745d30.xml

IACAS/sub-0025464/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025464/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/8g/MD5E-s182866--e22bbcb21c617e13d6c0622ef2b6ef5d.nii.gz/MD5E-s182866--e22bbcb21c617e13d6c0622ef2b6ef5d.nii.gz

IACAS/sub-0025464/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025464/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/QK/MD5E-s206073--a6f55c8d8f2bb0756f42f62fc14131a1.nii.gz/MD5E-s206073--a6f55c8d8f2bb0756f42f62fc14131a1.nii.gz

IACAS/sub-0025464/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025464/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/3Q/MD5E-s275860--df4808a1efbe95237bf44048c00bd82d.nii.gz/MD5E-s275860--df4808a1efbe95237bf44048c00bd82d.nii.gz

IACAS/sub-0025464/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025464/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/pP/MD5E-s306577--0173ba052ab1cb940bb3a2ebedc92f8a.nii.gz/MD5E-s306577--0173ba052ab1cb940bb3a2ebedc92f8a.nii.gz

IACAS/sub-0025464/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025464/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/5w/MD5E-s26528--b973052a533ef3f2b69f7e2ed1595ead.nii.gz/MD5E-s26528--b973052a533ef3f2b69f7e2ed1595ead.nii.gz

IACAS/sub-0025464/ses-2/mri/aal3_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025464/ses-2/mri/aal3_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/46/MD5E-s206612--4fdb1e4449fbc513df171f65b13b70e6.nii.gz/MD5E-s206612--4fdb1e4449fbc513df171f65b13b70e6.nii.gz

IACAS/sub-0025464/ses-2/mri/anatomy3_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025464/ses-2/mri/anatomy3_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/PK/MD5E-s150808--283751d1bed80c5c6ec90f9b03585846.nii.gz/MD5E-s150808--283751d1bed80c5c6ec90f9b03585846.nii.gz

IACAS/sub-0025464/ses-2/mri/anon_misub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/fg/MD5E-s10183582--0706a7977b737d530d8e73952530b991.nii.gz/MD5E-s10183582--0706a7977b737d530d8e73952530b991.nii.gz

IACAS/sub-0025464/ses-2/mri/anon_msub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/fZ/MD5E-s11363793--9c0ddb8843444e47882b23690803859c.nii.gz/MD5E-s11363793--9c0ddb8843444e47882b23690803859c.nii.gz

IACAS/sub-0025464/ses-2/mri/cat_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZF/11/MD5E-s117288--4943cc29cc4ebd8e7ae544ce637e6e07.nii.gz/MD5E-s117288--4943cc29cc4ebd8e7ae544ce637e6e07.nii.gz

IACAS/sub-0025464/ses-2/mri/cobra_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025464/ses-2/mri/cobra_sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/hammers_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025464/ses-2/mri/hammers_sub-0025464_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/22/KG/MD5E-s163137--3139ed70c5520b734d68a6a54fce98d0.nii.gz/MD5E-s163137--3139ed70c5520b734d68a6a54fce98d0.nii.gz

IACAS/sub-0025464/ses-2/mri/ibsr_sub-0025464_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025464/ses-2/mri/ibsr_sub-0025464_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pf/92/MD5E-s172257--e3916f9e1d4402ce1401bf310bf0c5fb.nii.gz/MD5E-s172257--e3916f9e1d4402ce1401bf310bf0c5fb.nii.gz

IACAS/sub-0025464/ses-2/mri/it_sub-0025464_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/2p/MD5E-s284--60ff989c4cd35bf3eebe6613920c38a8.mat/MD5E-s284--60ff989c4cd35bf3eebe6613920c38a8.mat

IACAS/sub-0025464/ses-2/mri/it_sub-0025464_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kf/V6/MD5E-s282--51e8747d5fc3fdc15d774b1e31339434.mat/MD5E-s282--51e8747d5fc3fdc15d774b1e31339434.mat

IACAS/sub-0025464/ses-2/mri/iy_sub-0025464_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/56/MD5E-s53309842--47bb691aa0e700c9c64c21759c74d041.nii.gz/MD5E-s53309842--47bb691aa0e700c9c64c21759c74d041.nii.gz

IACAS/sub-0025464/ses-2/mri/julichbrain_sub-0025464_ses-2_run-1_T1w.csv

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IACAS/sub-0025464/ses-2/mri/julichbrain_sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/lpba40_sub-0025464_ses-2_run-1_T1w.csv

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IACAS/sub-0025464/ses-2/mri/lpba40_sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/m0wp1sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/m0wp2sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/m0wp3sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/mori_sub-0025464_ses-2_run-1_T1w.csv

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IACAS/sub-0025464/ses-2/mri/mori_sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/mwp1sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/mwp2sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/mwp3sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/neuromorphometrics_sub-0025464_ses-2_run-1_T1w.csv

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IACAS/sub-0025464/ses-2/mri/neuromorphometrics_sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/p0sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/p1sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/p2sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/p3sub-0025464_ses-2_run-1_T1w.nii.gz

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IACAS/sub-0025464/ses-2/mri/rp1sub-0025464_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025464/ses-2/mri/rp2sub-0025464_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025464/ses-2/mri/rp3sub-0025464_ses-2_run-1_T1w_affine.nii.gz

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IACAS/sub-0025464/ses-2/mri/t_sub-0025464_ses-2_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025464/ses-2/mri/t_sub-0025464_ses-2_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025464/ses-2/mri/thalamus_sub-0025464_ses-2_run-1_T1w.csv

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IACAS/sub-0025464/ses-2/mri/thalamus_sub-0025464_ses-2_run-1_T1w.nii.gz

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