[DATALAD RUNCMD] Compute IPCAS_7/sub-0026117/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026117/ses-1/anat/sub-0026117_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026117/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026117/ses-1/label/catROI_sub-0026117_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/f1/MD5E-s61295--14ecb4122da7f021e38d18dd659936cf.mat/MD5E-s61295--14ecb4122da7f021e38d18dd659936cf.mat

IPCAS_7/sub-0026117/ses-1/label/catROI_sub-0026117_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/k1/MD5E-s189153--88ad2c940be2f4d6e5cc8361bf251231.xml/MD5E-s189153--88ad2c940be2f4d6e5cc8361bf251231.xml

IPCAS_7/sub-0026117/ses-1/label/catROIs_sub-0026117_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/Vj/MD5E-s120043--8d8af0a1859a2a0849946a9858b8cc8a.mat/MD5E-s120043--8d8af0a1859a2a0849946a9858b8cc8a.mat

IPCAS_7/sub-0026117/ses-1/label/catROIs_sub-0026117_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/Jp/MD5E-s332091--784b85612e8e82a5aa9d98ce285903d7.xml/MD5E-s332091--784b85612e8e82a5aa9d98ce285903d7.xml

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WP/jw/MD5E-s156121--39152e338c80e7252c26c2a31f32a544.nii.gz/MD5E-s156121--39152e338c80e7252c26c2a31f32a544.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jJ/Qm/MD5E-s175424--b5708f32bd3136c9e2877a9455a1411c.nii.gz/MD5E-s175424--b5708f32bd3136c9e2877a9455a1411c.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/6q/MD5E-s236037--e1adedf925a57a46c203c7a62ec2acf1.nii.gz/MD5E-s236037--e1adedf925a57a46c203c7a62ec2acf1.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026117/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/v1/MD5E-s263388--fe8af8b785b5d7efb5a99b15c93eef54.nii.gz/MD5E-s263388--fe8af8b785b5d7efb5a99b15c93eef54.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026117/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zP/m9/MD5E-s24824--6f197d16a8a5d4328a366b60f73437bc.nii.gz/MD5E-s24824--6f197d16a8a5d4328a366b60f73437bc.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/aal3_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026117/ses-1/mri/aal3_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wf/12/MD5E-s177633--0a1d937311c74f506beb7d1d74334a1a.nii.gz/MD5E-s177633--0a1d937311c74f506beb7d1d74334a1a.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/anatomy3_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_7/sub-0026117/ses-1/mri/anatomy3_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jZ/g8/MD5E-s128782--2f8da6d957868a79e5796ddf72222e5e.nii.gz/MD5E-s128782--2f8da6d957868a79e5796ddf72222e5e.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/anon_misub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/JP/MD5E-s4377857--0ccf50f1e1fe6760278c49b4649bd36d.nii.gz/MD5E-s4377857--0ccf50f1e1fe6760278c49b4649bd36d.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/anon_msub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/jj/MD5E-s11069706--cd13aa627b9ae3052391b3d0bfeea0f4.nii.gz/MD5E-s11069706--cd13aa627b9ae3052391b3d0bfeea0f4.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/cat_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026117/ses-1/mri/cobra_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026117/ses-1/mri/cobra_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/6P/MD5E-s45433--aca1efbcc345fa2d9bf2698028e62c54.nii.gz/MD5E-s45433--aca1efbcc345fa2d9bf2698028e62c54.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/hammers_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026117/ses-1/mri/hammers_sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/ibsr_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026117/ses-1/mri/ibsr_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/MJ/MD5E-s148268--cf10ccf9a6791268937bd1e2df3d00fc.nii.gz/MD5E-s148268--cf10ccf9a6791268937bd1e2df3d00fc.nii.gz

IPCAS_7/sub-0026117/ses-1/mri/it_sub-0026117_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f7/pf/MD5E-s283--f0bd08d2ed0f03feea622e45ed76a869.mat/MD5E-s283--f0bd08d2ed0f03feea622e45ed76a869.mat

IPCAS_7/sub-0026117/ses-1/mri/it_sub-0026117_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/X8/MD5E-s283--006c87abd847de679a155fdf5525191e.mat/MD5E-s283--006c87abd847de679a155fdf5525191e.mat

IPCAS_7/sub-0026117/ses-1/mri/iy_sub-0026117_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026117/ses-1/mri/julichbrain_sub-0026117_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026117/ses-1/mri/julichbrain_sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/lpba40_sub-0026117_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026117/ses-1/mri/lpba40_sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/m0wp1sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/m0wp2sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/m0wp3sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/mori_sub-0026117_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026117/ses-1/mri/mori_sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/mwp1sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/mwp2sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/mwp3sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/neuromorphometrics_sub-0026117_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026117/ses-1/mri/neuromorphometrics_sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/p0sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/p1sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/p2sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/p3sub-0026117_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/rp1sub-0026117_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/rp2sub-0026117_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/rp3sub-0026117_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026117/ses-1/mri/t_sub-0026117_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026117/ses-1/mri/t_sub-0026117_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026117/ses-1/mri/thalamus_sub-0026117_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026117/ses-1/mri/thalamus_sub-0026117_ses-1_run-1_T1w.nii.gz

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