[DATALAD RUNCMD] Compute NYU_2/sub-0025047/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025047/ses-2/anat/sub-0025047_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025047/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025047/ses-2/label/catROI_sub-0025047_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/Pq/MD5E-s57674--f9d8ec0df06079a562efc772f3ec2ba8.mat/MD5E-s57674--f9d8ec0df06079a562efc772f3ec2ba8.mat

NYU_2/sub-0025047/ses-2/label/catROI_sub-0025047_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qj/F2/MD5E-s189163--1a0c9368c596e93d130a6f1b6a581c44.xml/MD5E-s189163--1a0c9368c596e93d130a6f1b6a581c44.xml

NYU_2/sub-0025047/ses-2/label/catROIs_sub-0025047_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qF/9w/MD5E-s120126--4cdeca28e7f4e45ea54b0f6f41f246cf.mat/MD5E-s120126--4cdeca28e7f4e45ea54b0f6f41f246cf.mat

NYU_2/sub-0025047/ses-2/label/catROIs_sub-0025047_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/3w/MD5E-s332090--290b0341869a004a05a9440fc3f809ad.xml/MD5E-s332090--290b0341869a004a05a9440fc3f809ad.xml

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/xP/MD5E-s134026--dd0315daf077f857f66cc611766ac9bf.nii.gz/MD5E-s134026--dd0315daf077f857f66cc611766ac9bf.nii.gz

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/1j/MD5E-s151230--6be14f9382315087aec9c3ba413e096b.nii.gz/MD5E-s151230--6be14f9382315087aec9c3ba413e096b.nii.gz

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/9m/MD5E-s202360--ac7e8380c6530588d3dfae2db9ff5caf.nii.gz/MD5E-s202360--ac7e8380c6530588d3dfae2db9ff5caf.nii.gz

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025047/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/Gm/MD5E-s225996--462f3f4ebb1a0af4c57ffd0707c36a15.nii.gz/MD5E-s225996--462f3f4ebb1a0af4c57ffd0707c36a15.nii.gz

NYU_2/sub-0025047/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025047/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/Qz/MD5E-s18206--d62edc601494c72f98794035117cd004.nii.gz/MD5E-s18206--d62edc601494c72f98794035117cd004.nii.gz

NYU_2/sub-0025047/ses-2/mri/aal3_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025047/ses-2/mri/aal3_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/j8/MD5E-s155712--aba529525995fd63b668b6bf87a5885f.nii.gz/MD5E-s155712--aba529525995fd63b668b6bf87a5885f.nii.gz

NYU_2/sub-0025047/ses-2/mri/anatomy3_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025047/ses-2/mri/anatomy3_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/4v/MD5E-s108708--39eab0817f8a3f613a03fbbd1aa265fc.nii.gz/MD5E-s108708--39eab0817f8a3f613a03fbbd1aa265fc.nii.gz

NYU_2/sub-0025047/ses-2/mri/anon_misub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/F3/MD5E-s3981723--af52ac3bbafc2113e7a9e38b0ac508b3.nii.gz/MD5E-s3981723--af52ac3bbafc2113e7a9e38b0ac508b3.nii.gz

NYU_2/sub-0025047/ses-2/mri/anon_msub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/g5/MD5E-s6887629--59e0d69b8fba3f1bbbcd2b30d9114e39.nii.gz/MD5E-s6887629--59e0d69b8fba3f1bbbcd2b30d9114e39.nii.gz

NYU_2/sub-0025047/ses-2/mri/cat_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/36/MD5E-s81264--73da63148afc00ee26bb9fa6377c6a67.nii.gz/MD5E-s81264--73da63148afc00ee26bb9fa6377c6a67.nii.gz

NYU_2/sub-0025047/ses-2/mri/cobra_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025047/ses-2/mri/cobra_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/0K/MD5E-s38219--3fb3b7e1dad9f6feff70d862bd9c78dc.nii.gz/MD5E-s38219--3fb3b7e1dad9f6feff70d862bd9c78dc.nii.gz

NYU_2/sub-0025047/ses-2/mri/hammers_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025047/ses-2/mri/hammers_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/74/k8/MD5E-s117419--fbbd0aeef861e16bfb11ccf34c471a23.nii.gz/MD5E-s117419--fbbd0aeef861e16bfb11ccf34c471a23.nii.gz

NYU_2/sub-0025047/ses-2/mri/ibsr_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025047/ses-2/mri/ibsr_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/0J/MD5E-s125078--bf429af6da15d41a183d32f87213e570.nii.gz/MD5E-s125078--bf429af6da15d41a183d32f87213e570.nii.gz

NYU_2/sub-0025047/ses-2/mri/it_sub-0025047_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/71/MD5E-s283--c47285870b5845e0d0ae2abf55d63a9e.mat/MD5E-s283--c47285870b5845e0d0ae2abf55d63a9e.mat

NYU_2/sub-0025047/ses-2/mri/it_sub-0025047_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/xP/MD5E-s282--a4d6ad3b3775f7a44980d47017bf257d.mat/MD5E-s282--a4d6ad3b3775f7a44980d47017bf257d.mat

NYU_2/sub-0025047/ses-2/mri/iy_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/WX/MD5E-s31660600--48afca8f7623d021a5e29c91d94074e7.nii.gz/MD5E-s31660600--48afca8f7623d021a5e29c91d94074e7.nii.gz

NYU_2/sub-0025047/ses-2/mri/julichbrain_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025047/ses-2/mri/julichbrain_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/5F/MD5E-s159137--b9ad72074ca4a415d2f7a202cad4401c.nii.gz/MD5E-s159137--b9ad72074ca4a415d2f7a202cad4401c.nii.gz

NYU_2/sub-0025047/ses-2/mri/lpba40_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025047/ses-2/mri/lpba40_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mp/VW/MD5E-s115635--e65f559bdf5c81e0495f12a058dc21ca.nii.gz/MD5E-s115635--e65f559bdf5c81e0495f12a058dc21ca.nii.gz

NYU_2/sub-0025047/ses-2/mri/m0wp1sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/z4/MD5E-s2595654--a9becabd943879f7554d4b23a423f791.nii.gz/MD5E-s2595654--a9becabd943879f7554d4b23a423f791.nii.gz

NYU_2/sub-0025047/ses-2/mri/m0wp2sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3X/Gq/MD5E-s2282537--6b7ba8e7010b80b63e5bae0ac9d0f2f4.nii.gz/MD5E-s2282537--6b7ba8e7010b80b63e5bae0ac9d0f2f4.nii.gz

NYU_2/sub-0025047/ses-2/mri/m0wp3sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GP/Mv/MD5E-s2478760--f3f8bb31e78d0d1931d0fe60b1ebf2cf.nii.gz/MD5E-s2478760--f3f8bb31e78d0d1931d0fe60b1ebf2cf.nii.gz

NYU_2/sub-0025047/ses-2/mri/mori_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025047/ses-2/mri/mori_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/3q/MD5E-s142193--9d94de611e69be050f6e143ef6f9648c.nii.gz/MD5E-s142193--9d94de611e69be050f6e143ef6f9648c.nii.gz

NYU_2/sub-0025047/ses-2/mri/mwp1sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/g6/MD5E-s2603902--241ebc7b55b76e75d5e3030651c0fc5a.nii.gz/MD5E-s2603902--241ebc7b55b76e75d5e3030651c0fc5a.nii.gz

NYU_2/sub-0025047/ses-2/mri/mwp2sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/97/MD5E-s2286193--ee7cb02a3665275c0439f20fc871e872.nii.gz/MD5E-s2286193--ee7cb02a3665275c0439f20fc871e872.nii.gz

NYU_2/sub-0025047/ses-2/mri/mwp3sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/37/MD5E-s2475440--f6fc22c924362abc5ec39e75fcc3bc60.nii.gz/MD5E-s2475440--f6fc22c924362abc5ec39e75fcc3bc60.nii.gz

NYU_2/sub-0025047/ses-2/mri/neuromorphometrics_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025047/ses-2/mri/neuromorphometrics_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/gx/MD5E-s161995--c538fe874eac2bf2697147674efbc0f2.nii.gz/MD5E-s161995--c538fe874eac2bf2697147674efbc0f2.nii.gz

NYU_2/sub-0025047/ses-2/mri/p0sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/v1/MD5E-s681950--1d21f4c1b078901bf1ee14edb13c30ee.nii.gz/MD5E-s681950--1d21f4c1b078901bf1ee14edb13c30ee.nii.gz

NYU_2/sub-0025047/ses-2/mri/p1sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025047/ses-2/mri/p2sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/1M/MD5E-s471117--6ec9ef48f2ecb664310eb60e207af18a.nii.gz/MD5E-s471117--6ec9ef48f2ecb664310eb60e207af18a.nii.gz

NYU_2/sub-0025047/ses-2/mri/p3sub-0025047_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025047/ses-2/mri/rp1sub-0025047_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/J1/MD5E-s443518--be76c7fd3955e0465b03519b7254d68c.nii.gz/MD5E-s443518--be76c7fd3955e0465b03519b7254d68c.nii.gz

NYU_2/sub-0025047/ses-2/mri/rp2sub-0025047_ses-2_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025047/ses-2/mri/rp3sub-0025047_ses-2_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025047/ses-2/mri/t_sub-0025047_ses-2_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025047/ses-2/mri/t_sub-0025047_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/4M/MD5E-s284--9fd6caa60c52ca1a6e604df89cefaf50.mat/MD5E-s284--9fd6caa60c52ca1a6e604df89cefaf50.mat

NYU_2/sub-0025047/ses-2/mri/thalamus_sub-0025047_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025047/ses-2/mri/thalamus_sub-0025047_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/f1/MD5E-s12215--743041699008735f8054ca9fe75103aa.nii.gz/MD5E-s12215--743041699008735f8054ca9fe75103aa.nii.gz

NYU_2/sub-0025047/ses-2/mri/wj_sub-0025047_ses-2_run-1_T1w.nii.gz

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