[DATALAD RUNCMD] Compute SWU_4/sub-0025860/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025860/ses-1/anat/sub-0025860_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025860/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025860/ses-1/label/catROI_sub-0025860_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/wq/MD5E-s61233--5c0362c204ebb9e9f5d4c5b681263219.mat/MD5E-s61233--5c0362c204ebb9e9f5d4c5b681263219.mat

SWU_4/sub-0025860/ses-1/label/catROI_sub-0025860_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/Kx/MD5E-s188919--1b8bc032c8e6a02c87b5bfbad69c68ae.xml/MD5E-s188919--1b8bc032c8e6a02c87b5bfbad69c68ae.xml

SWU_4/sub-0025860/ses-1/label/catROIs_sub-0025860_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/0K/MD5E-s120099--cfa8bccc505053a9fe3fe032e6ee3615.mat/MD5E-s120099--cfa8bccc505053a9fe3fe032e6ee3615.mat

SWU_4/sub-0025860/ses-1/label/catROIs_sub-0025860_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/5m/MD5E-s332147--7629ef2cf636f8665da15fb95fdad4cd.xml/MD5E-s332147--7629ef2cf636f8665da15fb95fdad4cd.xml

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/6k/MD5E-s157098--831ad71d15a57011703b1380cd1a9169.nii.gz/MD5E-s157098--831ad71d15a57011703b1380cd1a9169.nii.gz

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/gX/MD5E-s176399--b7a4a14e16e69eefcf96284f7c1b3cae.nii.gz/MD5E-s176399--b7a4a14e16e69eefcf96284f7c1b3cae.nii.gz

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/M0/MD5E-s236581--da7e17573c96e2e14a4a11b0e39ab5c2.nii.gz/MD5E-s236581--da7e17573c96e2e14a4a11b0e39ab5c2.nii.gz

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025860/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/48/MD5E-s264212--4b453e88eefda08773c990448cb7aa2b.nii.gz/MD5E-s264212--4b453e88eefda08773c990448cb7aa2b.nii.gz

SWU_4/sub-0025860/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025860/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/Q7/MD5E-s24977--c3265abb731d904d5aead803aa7fbd8f.nii.gz/MD5E-s24977--c3265abb731d904d5aead803aa7fbd8f.nii.gz

SWU_4/sub-0025860/ses-1/mri/aal3_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025860/ses-1/mri/aal3_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WJ/JV/MD5E-s179395--a7f116d72b6e43bdf1284fc5cef66c4e.nii.gz/MD5E-s179395--a7f116d72b6e43bdf1284fc5cef66c4e.nii.gz

SWU_4/sub-0025860/ses-1/mri/anatomy3_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025860/ses-1/mri/anatomy3_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/KK/MD5E-s128747--40a126058b2b602b929ce02f0aae7b4c.nii.gz/MD5E-s128747--40a126058b2b602b929ce02f0aae7b4c.nii.gz

SWU_4/sub-0025860/ses-1/mri/anon_misub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/MJ/MD5E-s9164588--4f148a046afe796c546a13ac93a8f79e.nii.gz/MD5E-s9164588--4f148a046afe796c546a13ac93a8f79e.nii.gz

SWU_4/sub-0025860/ses-1/mri/anon_msub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/g8/MD5E-s10626951--511fd0ddc7f9a7c1da294524e2e3be6a.nii.gz/MD5E-s10626951--511fd0ddc7f9a7c1da294524e2e3be6a.nii.gz

SWU_4/sub-0025860/ses-1/mri/cat_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xk/G1/MD5E-s96388--d2cbf49c107b19808e5ed80f4a4297cf.nii.gz/MD5E-s96388--d2cbf49c107b19808e5ed80f4a4297cf.nii.gz

SWU_4/sub-0025860/ses-1/mri/cobra_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025860/ses-1/mri/cobra_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2V/7M/MD5E-s47042--a0a91b979d07aee7ea20b0fc3dc7c550.nii.gz/MD5E-s47042--a0a91b979d07aee7ea20b0fc3dc7c550.nii.gz

SWU_4/sub-0025860/ses-1/mri/hammers_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025860/ses-1/mri/hammers_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6m/jQ/MD5E-s140737--48174ac13a3da1cfa440b37a21d63c9f.nii.gz/MD5E-s140737--48174ac13a3da1cfa440b37a21d63c9f.nii.gz

SWU_4/sub-0025860/ses-1/mri/ibsr_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025860/ses-1/mri/ibsr_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/f9/MD5E-s149413--90875f08b7933c3d3689bb832d9b5c95.nii.gz/MD5E-s149413--90875f08b7933c3d3689bb832d9b5c95.nii.gz

SWU_4/sub-0025860/ses-1/mri/it_sub-0025860_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/M2/MD5E-s282--c3c2f17a4f83795ae361b3dbc26a00c7.mat/MD5E-s282--c3c2f17a4f83795ae361b3dbc26a00c7.mat

SWU_4/sub-0025860/ses-1/mri/it_sub-0025860_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z1/zZ/MD5E-s282--fc9f59e56197d579fc3441824e82ab5e.mat/MD5E-s282--fc9f59e56197d579fc3441824e82ab5e.mat

SWU_4/sub-0025860/ses-1/mri/iy_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gv/q3/MD5E-s42568081--55104c9d4934d9cc535b04e5e67f5704.nii.gz/MD5E-s42568081--55104c9d4934d9cc535b04e5e67f5704.nii.gz

SWU_4/sub-0025860/ses-1/mri/julichbrain_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025860/ses-1/mri/julichbrain_sub-0025860_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/2z/z5/MD5E-s188486--3e4c160cc1e7d1ed7f9b7d57e1069b4c.nii.gz/MD5E-s188486--3e4c160cc1e7d1ed7f9b7d57e1069b4c.nii.gz

SWU_4/sub-0025860/ses-1/mri/lpba40_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025860/ses-1/mri/lpba40_sub-0025860_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025860/ses-1/mri/m0wp1sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fF/W8/MD5E-s2590314--0811e8ea3fbe7f32585d46d47074e162.nii.gz/MD5E-s2590314--0811e8ea3fbe7f32585d46d47074e162.nii.gz

SWU_4/sub-0025860/ses-1/mri/m0wp2sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/vK/MD5E-s2295520--d9f163ff28d6d4c7932591ef2c7aadad.nii.gz/MD5E-s2295520--d9f163ff28d6d4c7932591ef2c7aadad.nii.gz

SWU_4/sub-0025860/ses-1/mri/m0wp3sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zx/G0/MD5E-s2564777--f1caaf6711c71b0fc64d137a8c4c0e20.nii.gz/MD5E-s2564777--f1caaf6711c71b0fc64d137a8c4c0e20.nii.gz

SWU_4/sub-0025860/ses-1/mri/mori_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025860/ses-1/mri/mori_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/mf/MD5E-s165102--e187ab9a03277ed7da176b7ac863d60a.nii.gz/MD5E-s165102--e187ab9a03277ed7da176b7ac863d60a.nii.gz

SWU_4/sub-0025860/ses-1/mri/mwp1sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/4Q/MD5E-s2598676--69587be4622ebf7a389ef46e5f9713e2.nii.gz/MD5E-s2598676--69587be4622ebf7a389ef46e5f9713e2.nii.gz

SWU_4/sub-0025860/ses-1/mri/mwp2sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025860/ses-1/mri/mwp3sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025860/ses-1/mri/neuromorphometrics_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025860/ses-1/mri/neuromorphometrics_sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fP/W8/MD5E-s189087--fcbc20d4060aaf4e9fe694473574f5e9.nii.gz/MD5E-s189087--fcbc20d4060aaf4e9fe694473574f5e9.nii.gz

SWU_4/sub-0025860/ses-1/mri/p0sub-0025860_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025860/ses-1/mri/p1sub-0025860_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/wz/fj/MD5E-s628252--f976688e14e310997d6c82c792c98520.nii.gz/MD5E-s628252--f976688e14e310997d6c82c792c98520.nii.gz

SWU_4/sub-0025860/ses-1/mri/p2sub-0025860_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025860/ses-1/mri/p3sub-0025860_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025860/ses-1/mri/rp1sub-0025860_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025860/ses-1/mri/rp2sub-0025860_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025860/ses-1/mri/rp3sub-0025860_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025860/ses-1/mri/t_sub-0025860_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p7/5g/MD5E-s284--d15b549e6a63f6f2ccf70a8c015f61d1.mat/MD5E-s284--d15b549e6a63f6f2ccf70a8c015f61d1.mat

SWU_4/sub-0025860/ses-1/mri/t_sub-0025860_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025860/ses-1/mri/thalamus_sub-0025860_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025860/ses-1/mri/thalamus_sub-0025860_ses-1_run-1_T1w.nii.gz

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