[DATALAD RUNCMD] Compute Utah_1/sub-0026025/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/Utah_1/sub-0026025/ses-1/anat/sub-0026025_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "Utah_1/sub-0026025/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

Utah_1/sub-0026025/ses-1/label/catROI_sub-0026025_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/Qm/MD5E-s61470--b667bd6475c411d05b4dd1cdbb872d82.mat/MD5E-s61470--b667bd6475c411d05b4dd1cdbb872d82.mat

Utah_1/sub-0026025/ses-1/label/catROI_sub-0026025_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/WW/MD5E-s189074--b022affcaba25aff536b352c4186d938.xml/MD5E-s189074--b022affcaba25aff536b352c4186d938.xml

Utah_1/sub-0026025/ses-1/label/catROIs_sub-0026025_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/7V/MD5E-s120087--407e260bb841f89018683da87193a5f3.mat/MD5E-s120087--407e260bb841f89018683da87193a5f3.mat

Utah_1/sub-0026025/ses-1/label/catROIs_sub-0026025_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/10/gZ/MD5E-s332161--64a5fbcee4a2c4fbdd6f83b8ce9296d7.xml/MD5E-s332161--64a5fbcee4a2c4fbdd6f83b8ce9296d7.xml

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/fP/MD5E-s408169--17d64bca3a011e052aaffc4159b81bd6.nii.gz/MD5E-s408169--17d64bca3a011e052aaffc4159b81bd6.nii.gz

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/2f/MD5E-s453100--40bb733b4ea4777e689f71fc903f77f0.nii.gz/MD5E-s453100--40bb733b4ea4777e689f71fc903f77f0.nii.gz

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/Qm/MD5E-s652301--89d8e03527727d72a73ea867c0ab8961.nii.gz/MD5E-s652301--89d8e03527727d72a73ea867c0ab8961.nii.gz

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

Utah_1/sub-0026025/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1f/z6/MD5E-s716335--c145e125ee944f258eace81416663e62.nii.gz/MD5E-s716335--c145e125ee944f258eace81416663e62.nii.gz

Utah_1/sub-0026025/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

Utah_1/sub-0026025/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/zw/MD5E-s70597--528ac6f07c00dbbb1b8cd5932e4a2f43.nii.gz/MD5E-s70597--528ac6f07c00dbbb1b8cd5932e4a2f43.nii.gz

Utah_1/sub-0026025/ses-1/mri/aal3_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

Utah_1/sub-0026025/ses-1/mri/aal3_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/Gj/MD5E-s461007--659b9291aabc61268d2c9512526d7e19.nii.gz/MD5E-s461007--659b9291aabc61268d2c9512526d7e19.nii.gz

Utah_1/sub-0026025/ses-1/mri/anatomy3_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

Utah_1/sub-0026025/ses-1/mri/anatomy3_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/8K/MD5E-s344999--56f9a121b0bec13ba31d72925be3f899.nii.gz/MD5E-s344999--56f9a121b0bec13ba31d72925be3f899.nii.gz

Utah_1/sub-0026025/ses-1/mri/anon_misub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mv/JK/MD5E-s20287946--9b4f1f6ddf1a175d3036637aadc48535.nii.gz/MD5E-s20287946--9b4f1f6ddf1a175d3036637aadc48535.nii.gz

Utah_1/sub-0026025/ses-1/mri/anon_msub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/9W/MD5E-s34119437--6a2b5c668eadb7d3819b7a73c14a2d3d.nii.gz/MD5E-s34119437--6a2b5c668eadb7d3819b7a73c14a2d3d.nii.gz

Utah_1/sub-0026025/ses-1/mri/cat_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/kJ/MD5E-s266639--94495238d5bc7a6ec9b6ad1640fc4f97.nii.gz/MD5E-s266639--94495238d5bc7a6ec9b6ad1640fc4f97.nii.gz

Utah_1/sub-0026025/ses-1/mri/cobra_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

Utah_1/sub-0026025/ses-1/mri/cobra_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/8q/MD5E-s132355--6dc086232e29853db92e295278b12c5d.nii.gz/MD5E-s132355--6dc086232e29853db92e295278b12c5d.nii.gz

Utah_1/sub-0026025/ses-1/mri/hammers_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

Utah_1/sub-0026025/ses-1/mri/hammers_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/1k/MD5E-s368406--b60892f821232beecb7ca2e2aa500e02.nii.gz/MD5E-s368406--b60892f821232beecb7ca2e2aa500e02.nii.gz

Utah_1/sub-0026025/ses-1/mri/ibsr_sub-0026025_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

Utah_1/sub-0026025/ses-1/mri/ibsr_sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/z5/MD5E-s392965--d8b0e12a88de51a52bb6d56fb7ddda7d.nii.gz/MD5E-s392965--d8b0e12a88de51a52bb6d56fb7ddda7d.nii.gz

Utah_1/sub-0026025/ses-1/mri/it_sub-0026025_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/Fw/MD5E-s284--351b09111fcd3d1962d9b16e2f8fad5f.mat/MD5E-s284--351b09111fcd3d1962d9b16e2f8fad5f.mat

Utah_1/sub-0026025/ses-1/mri/it_sub-0026025_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J0/6Q/MD5E-s283--85c1ca3c89ff7a79336d80f3bd838135.mat/MD5E-s283--85c1ca3c89ff7a79336d80f3bd838135.mat

Utah_1/sub-0026025/ses-1/mri/iy_sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/julichbrain_sub-0026025_ses-1_run-1_T1w.csv

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Utah_1/sub-0026025/ses-1/mri/julichbrain_sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/lpba40_sub-0026025_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

Utah_1/sub-0026025/ses-1/mri/lpba40_sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/m0wp1sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/f4/MD5E-s2553752--d6cdab2f7dcd00e2bb97f92914237db0.nii.gz/MD5E-s2553752--d6cdab2f7dcd00e2bb97f92914237db0.nii.gz

Utah_1/sub-0026025/ses-1/mri/m0wp2sub-0026025_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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Utah_1/sub-0026025/ses-1/mri/m0wp3sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/mori_sub-0026025_ses-1_run-1_T1w.csv

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Utah_1/sub-0026025/ses-1/mri/mori_sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/mwp1sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/mwp2sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/mwp3sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/neuromorphometrics_sub-0026025_ses-1_run-1_T1w.csv

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Utah_1/sub-0026025/ses-1/mri/neuromorphometrics_sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/p0sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/p1sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/p2sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/p3sub-0026025_ses-1_run-1_T1w.nii.gz

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Utah_1/sub-0026025/ses-1/mri/rp1sub-0026025_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026025/ses-1/mri/rp2sub-0026025_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026025/ses-1/mri/rp3sub-0026025_ses-1_run-1_T1w_affine.nii.gz

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Utah_1/sub-0026025/ses-1/mri/t_sub-0026025_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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Utah_1/sub-0026025/ses-1/mri/t_sub-0026025_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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Utah_1/sub-0026025/ses-1/mri/thalamus_sub-0026025_ses-1_run-1_T1w.csv

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Utah_1/sub-0026025/ses-1/mri/thalamus_sub-0026025_ses-1_run-1_T1w.nii.gz

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