[DATALAD RUNCMD] Compute BNU_1/sub-0025889/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025889/ses-2/anat/sub-0025889_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025889/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025889/ses-2/label/catROI_sub-0025889_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8j/ZF/MD5E-s61296--5503a619ab78f716ac2a3a6c9b9e2f70.mat/MD5E-s61296--5503a619ab78f716ac2a3a6c9b9e2f70.mat

BNU_1/sub-0025889/ses-2/label/catROI_sub-0025889_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/Wz/MD5E-s189109--b151d8bdac2d303359d65abd1c39e443.xml/MD5E-s189109--b151d8bdac2d303359d65abd1c39e443.xml

BNU_1/sub-0025889/ses-2/label/catROIs_sub-0025889_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jp/KK/MD5E-s120094--8859f838c9d0bf801f9741e7fffa46d6.mat/MD5E-s120094--8859f838c9d0bf801f9741e7fffa46d6.mat

BNU_1/sub-0025889/ses-2/label/catROIs_sub-0025889_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/wx/MD5E-s332186--a40483dec79d40f4e044553a2ae85dad.xml/MD5E-s332186--a40483dec79d40f4e044553a2ae85dad.xml

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P8/Wm/MD5E-s139016--492e2ab7aa133e8f9db600ec7ee345b4.nii.gz/MD5E-s139016--492e2ab7aa133e8f9db600ec7ee345b4.nii.gz

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/gk/MD5E-s158115--493ad6417fd752961308ae084920d27f.nii.gz/MD5E-s158115--493ad6417fd752961308ae084920d27f.nii.gz

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/5m/MD5E-s212674--6b7d29c9783d339b6f1cfc24f719b9b5.nii.gz/MD5E-s212674--6b7d29c9783d339b6f1cfc24f719b9b5.nii.gz

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025889/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w3/G1/MD5E-s236669--e50f57644be6219f5adc0b3c36d52d24.nii.gz/MD5E-s236669--e50f57644be6219f5adc0b3c36d52d24.nii.gz

BNU_1/sub-0025889/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025889/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/78/MD5E-s20128--35713b5f7af68e756369d3096c71a3c4.nii.gz/MD5E-s20128--35713b5f7af68e756369d3096c71a3c4.nii.gz

BNU_1/sub-0025889/ses-2/mri/aal3_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025889/ses-2/mri/aal3_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/90/Xx/MD5E-s158875--bd2f71f9ecfdecc223ccf0bcb4a5cca6.nii.gz/MD5E-s158875--bd2f71f9ecfdecc223ccf0bcb4a5cca6.nii.gz

BNU_1/sub-0025889/ses-2/mri/anatomy3_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025889/ses-2/mri/anatomy3_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/G1/MD5E-s113680--08418df99a6915ba756f01765cd83011.nii.gz/MD5E-s113680--08418df99a6915ba756f01765cd83011.nii.gz

BNU_1/sub-0025889/ses-2/mri/anon_misub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X6/5G/MD5E-s3801694--f90cbc5108ae3d1c1b26aec6ebc34d33.nii.gz/MD5E-s3801694--f90cbc5108ae3d1c1b26aec6ebc34d33.nii.gz

BNU_1/sub-0025889/ses-2/mri/anon_msub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/4J/MD5E-s10086469--2e1b2bee4f03cc7f8a400d42e44ddc64.nii.gz/MD5E-s10086469--2e1b2bee4f03cc7f8a400d42e44ddc64.nii.gz

BNU_1/sub-0025889/ses-2/mri/cat_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/zw/MD5E-s86795--58cddfa9fbc4d39a053267ebefab95fe.nii.gz/MD5E-s86795--58cddfa9fbc4d39a053267ebefab95fe.nii.gz

BNU_1/sub-0025889/ses-2/mri/cobra_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025889/ses-2/mri/cobra_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/k8/MD5E-s40054--4a38963000438c8bbe8156de75fc60a0.nii.gz/MD5E-s40054--4a38963000438c8bbe8156de75fc60a0.nii.gz

BNU_1/sub-0025889/ses-2/mri/hammers_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025889/ses-2/mri/hammers_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xj/6p/MD5E-s126892--0e911d60ef4d5ca6d6b1f197effdc430.nii.gz/MD5E-s126892--0e911d60ef4d5ca6d6b1f197effdc430.nii.gz

BNU_1/sub-0025889/ses-2/mri/ibsr_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025889/ses-2/mri/ibsr_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W3/16/MD5E-s131586--05da635a3f7be9e098afc2d7282c11ba.nii.gz/MD5E-s131586--05da635a3f7be9e098afc2d7282c11ba.nii.gz

BNU_1/sub-0025889/ses-2/mri/it_sub-0025889_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/61/MD5E-s283--15688735e9698d0edf85f116145716c2.mat/MD5E-s283--15688735e9698d0edf85f116145716c2.mat

BNU_1/sub-0025889/ses-2/mri/it_sub-0025889_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/MV/MD5E-s283--511e8d45e47d6ed99118a42dd61ba8ad.mat/MD5E-s283--511e8d45e47d6ed99118a42dd61ba8ad.mat

BNU_1/sub-0025889/ses-2/mri/iy_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/43/kg/MD5E-s33538820--c487a6e78fc11e52ccddfcfbde5335b2.nii.gz/MD5E-s33538820--c487a6e78fc11e52ccddfcfbde5335b2.nii.gz

BNU_1/sub-0025889/ses-2/mri/julichbrain_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025889/ses-2/mri/julichbrain_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/pK/MD5E-s169450--500807fd794c560e13b1256e8a9112fb.nii.gz/MD5E-s169450--500807fd794c560e13b1256e8a9112fb.nii.gz

BNU_1/sub-0025889/ses-2/mri/lpba40_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025889/ses-2/mri/lpba40_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/gf/MD5E-s124075--084b4979ee2735a863f1a1ba58d169bf.nii.gz/MD5E-s124075--084b4979ee2735a863f1a1ba58d169bf.nii.gz

BNU_1/sub-0025889/ses-2/mri/m0wp1sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/GM/MD5E-s2583165--dbbf73e7685dedeba8104666fd94e38c.nii.gz/MD5E-s2583165--dbbf73e7685dedeba8104666fd94e38c.nii.gz

BNU_1/sub-0025889/ses-2/mri/m0wp2sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/81/MD5E-s2277432--9aa2de1f0567a4d0ed018caac4add4db.nii.gz/MD5E-s2277432--9aa2de1f0567a4d0ed018caac4add4db.nii.gz

BNU_1/sub-0025889/ses-2/mri/m0wp3sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/Kz/MD5E-s2477790--2e2a6abf829b1d39f0e927d055202b08.nii.gz/MD5E-s2477790--2e2a6abf829b1d39f0e927d055202b08.nii.gz

BNU_1/sub-0025889/ses-2/mri/mori_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025889/ses-2/mri/mori_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/23/MD5E-s145652--69e62a3fcf9fdba2b7d98a5c6c308e43.nii.gz/MD5E-s145652--69e62a3fcf9fdba2b7d98a5c6c308e43.nii.gz

BNU_1/sub-0025889/ses-2/mri/mwp1sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/wm/MD5E-s2588840--2e9707915520d8964edfbdc4ea325691.nii.gz/MD5E-s2588840--2e9707915520d8964edfbdc4ea325691.nii.gz

BNU_1/sub-0025889/ses-2/mri/mwp2sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/M0/MD5E-s2280616--7ec2d23e8cb6440cece4efb841b8bda4.nii.gz/MD5E-s2280616--7ec2d23e8cb6440cece4efb841b8bda4.nii.gz

BNU_1/sub-0025889/ses-2/mri/mwp3sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/J0/MD5E-s2476420--22f2288527482bba71c410f6aa7a9bae.nii.gz/MD5E-s2476420--22f2288527482bba71c410f6aa7a9bae.nii.gz

BNU_1/sub-0025889/ses-2/mri/neuromorphometrics_sub-0025889_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025889/ses-2/mri/neuromorphometrics_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025889/ses-2/mri/p0sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/W0/MD5E-s722147--2d8f17a48d01ad05404c78383029121c.nii.gz/MD5E-s722147--2d8f17a48d01ad05404c78383029121c.nii.gz

BNU_1/sub-0025889/ses-2/mri/p1sub-0025889_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025889/ses-2/mri/p2sub-0025889_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/m4/QX/MD5E-s492627--754d28ecdbdf22021f19e74601a76b5a.nii.gz/MD5E-s492627--754d28ecdbdf22021f19e74601a76b5a.nii.gz

BNU_1/sub-0025889/ses-2/mri/p3sub-0025889_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025889/ses-2/mri/rp1sub-0025889_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025889/ses-2/mri/rp2sub-0025889_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025889/ses-2/mri/rp3sub-0025889_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025889/ses-2/mri/t_sub-0025889_ses-2_run-1_T1w_affine_reorient.mat

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BNU_1/sub-0025889/ses-2/mri/t_sub-0025889_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fw/4j/MD5E-s284--917efdf1de19e5c83aa2b209409ddc97.mat/MD5E-s284--917efdf1de19e5c83aa2b209409ddc97.mat

BNU_1/sub-0025889/ses-2/mri/thalamus_sub-0025889_ses-2_run-1_T1w.csv

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BNU_1/sub-0025889/ses-2/mri/thalamus_sub-0025889_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025889/ses-2/mri/wj_sub-0025889_ses-2_run-1_T1w.nii.gz

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