[DATALAD RUNCMD] Compute LMU_1/sub-0025339/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025339/ses-1/anat/sub-0025339_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025339/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025339/ses-1/label/catROI_sub-0025339_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/4K/MD5E-s57456--7dd03ff54a98be3ee9c06c94028d81c6.mat/MD5E-s57456--7dd03ff54a98be3ee9c06c94028d81c6.mat

LMU_1/sub-0025339/ses-1/label/catROI_sub-0025339_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/PZ/MD5E-s189149--87c45b3246412c1c211415e4c01c3061.xml/MD5E-s189149--87c45b3246412c1c211415e4c01c3061.xml

LMU_1/sub-0025339/ses-1/label/catROIs_sub-0025339_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/2F/MD5E-s120051--67cb69d5fa63a5a9c15c9047bb6b7027.mat/MD5E-s120051--67cb69d5fa63a5a9c15c9047bb6b7027.mat

LMU_1/sub-0025339/ses-1/label/catROIs_sub-0025339_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZF/1p/MD5E-s332184--e3e423ef1b36b34dd8c5bdff5a8c002a.xml/MD5E-s332184--e3e423ef1b36b34dd8c5bdff5a8c002a.xml

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/jz/MD5E-s191606--b8a5d79aa822f48e0c8cbe1239028479.nii.gz/MD5E-s191606--b8a5d79aa822f48e0c8cbe1239028479.nii.gz

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/Xx/MD5E-s215923--8e739c183dad51abab1df697d3458c33.nii.gz/MD5E-s215923--8e739c183dad51abab1df697d3458c33.nii.gz

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/K6/MD5E-s276196--49cd4d0782087d9064d82c6bad47144f.nii.gz/MD5E-s276196--49cd4d0782087d9064d82c6bad47144f.nii.gz

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025339/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/M8/MD5E-s305995--42b79ff7211d3a3660fb4d09b87f03fd.nii.gz/MD5E-s305995--42b79ff7211d3a3660fb4d09b87f03fd.nii.gz

LMU_1/sub-0025339/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025339/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/Wm/MD5E-s30545--d105915f1f02554b522687b27eff3882.nii.gz/MD5E-s30545--d105915f1f02554b522687b27eff3882.nii.gz

LMU_1/sub-0025339/ses-1/mri/aal3_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025339/ses-1/mri/aal3_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pM/J7/MD5E-s221764--aec27479cf96cd1e960bbdef6556de65.nii.gz/MD5E-s221764--aec27479cf96cd1e960bbdef6556de65.nii.gz

LMU_1/sub-0025339/ses-1/mri/anatomy3_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025339/ses-1/mri/anatomy3_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/MZ/MD5E-s155075--1192e3fbd037d87f72f178c8edd4fd08.nii.gz/MD5E-s155075--1192e3fbd037d87f72f178c8edd4fd08.nii.gz

LMU_1/sub-0025339/ses-1/mri/anon_misub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/6P/MD5E-s4950837--d150e0146a4a5e55ce47cfcd9da2e265.nii.gz/MD5E-s4950837--d150e0146a4a5e55ce47cfcd9da2e265.nii.gz

LMU_1/sub-0025339/ses-1/mri/anon_msub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/qm/MD5E-s12104911--f79a755cabf04fa000d39d857e6fb8f8.nii.gz/MD5E-s12104911--f79a755cabf04fa000d39d857e6fb8f8.nii.gz

LMU_1/sub-0025339/ses-1/mri/cat_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/fv/MD5E-s118994--031435c5f5857762ae6c4f272ed924f6.nii.gz/MD5E-s118994--031435c5f5857762ae6c4f272ed924f6.nii.gz

LMU_1/sub-0025339/ses-1/mri/cobra_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025339/ses-1/mri/cobra_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/qX/MD5E-s56755--fc3dd72bb2f090c1346f0d19be127cf8.nii.gz/MD5E-s56755--fc3dd72bb2f090c1346f0d19be127cf8.nii.gz

LMU_1/sub-0025339/ses-1/mri/hammers_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025339/ses-1/mri/hammers_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/M7/MD5E-s174422--6d34ef013c7af52a3ef806628da20607.nii.gz/MD5E-s174422--6d34ef013c7af52a3ef806628da20607.nii.gz

LMU_1/sub-0025339/ses-1/mri/ibsr_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025339/ses-1/mri/ibsr_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/m5/MD5E-s177781--c6adae24723bbf33f4188fa5f73c5516.nii.gz/MD5E-s177781--c6adae24723bbf33f4188fa5f73c5516.nii.gz

LMU_1/sub-0025339/ses-1/mri/it_sub-0025339_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/xf/MD5E-s284--84ce5a39fc02721c9404fe35f62e5c72.mat/MD5E-s284--84ce5a39fc02721c9404fe35f62e5c72.mat

LMU_1/sub-0025339/ses-1/mri/it_sub-0025339_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3W/p7/MD5E-s282--ceab8f191fd600ced7fbe2e3943dc00a.mat/MD5E-s282--ceab8f191fd600ced7fbe2e3943dc00a.mat

LMU_1/sub-0025339/ses-1/mri/iy_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/1x/MD5E-s49485029--91d80cc5936529897ac86396fb8c155b.nii.gz/MD5E-s49485029--91d80cc5936529897ac86396fb8c155b.nii.gz

LMU_1/sub-0025339/ses-1/mri/julichbrain_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025339/ses-1/mri/julichbrain_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vq/Z1/MD5E-s228346--4b0053f48517252daa98c89e7752cf39.nii.gz/MD5E-s228346--4b0053f48517252daa98c89e7752cf39.nii.gz

LMU_1/sub-0025339/ses-1/mri/lpba40_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025339/ses-1/mri/lpba40_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/G1/MD5E-s170589--cffd9ecab3aad6a0e4f3679eb9154cda.nii.gz/MD5E-s170589--cffd9ecab3aad6a0e4f3679eb9154cda.nii.gz

LMU_1/sub-0025339/ses-1/mri/m0wp1sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/74/MD5E-s2584233--631ed61597dae8a2fcda4dd92484d413.nii.gz/MD5E-s2584233--631ed61597dae8a2fcda4dd92484d413.nii.gz

LMU_1/sub-0025339/ses-1/mri/m0wp2sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/7M/MD5E-s2279876--3ed415e97655ace205ecf2086fb913d8.nii.gz/MD5E-s2279876--3ed415e97655ace205ecf2086fb913d8.nii.gz

LMU_1/sub-0025339/ses-1/mri/m0wp3sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5j/80/MD5E-s2521851--d6c4b9a8751af1a84651ce0d0311267c.nii.gz/MD5E-s2521851--d6c4b9a8751af1a84651ce0d0311267c.nii.gz

LMU_1/sub-0025339/ses-1/mri/mori_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025339/ses-1/mri/mori_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/7Q/MD5E-s201787--f48291fd932bda5f26cf93699b0bd4ba.nii.gz/MD5E-s201787--f48291fd932bda5f26cf93699b0bd4ba.nii.gz

LMU_1/sub-0025339/ses-1/mri/mwp1sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q9/wv/MD5E-s2593233--b2d768c2ee4e3682c358cd267255f444.nii.gz/MD5E-s2593233--b2d768c2ee4e3682c358cd267255f444.nii.gz

LMU_1/sub-0025339/ses-1/mri/mwp2sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/x6/MD5E-s2280367--b70cd37276c0c4b24619cc74e681c3b5.nii.gz/MD5E-s2280367--b70cd37276c0c4b24619cc74e681c3b5.nii.gz

LMU_1/sub-0025339/ses-1/mri/mwp3sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/5K/MD5E-s2521822--ab2574108f8055cad6be9771f076b163.nii.gz/MD5E-s2521822--ab2574108f8055cad6be9771f076b163.nii.gz

LMU_1/sub-0025339/ses-1/mri/neuromorphometrics_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_1/sub-0025339/ses-1/mri/neuromorphometrics_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/34/MD5E-s228576--8b9032e04f47ed2c849752b792ef7bcd.nii.gz/MD5E-s228576--8b9032e04f47ed2c849752b792ef7bcd.nii.gz

LMU_1/sub-0025339/ses-1/mri/p0sub-0025339_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/M3/zp/MD5E-s689894--1d5d6d9c9b0b68cd6ecf660ac102884e.nii.gz/MD5E-s689894--1d5d6d9c9b0b68cd6ecf660ac102884e.nii.gz

LMU_1/sub-0025339/ses-1/mri/p1sub-0025339_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025339/ses-1/mri/p2sub-0025339_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025339/ses-1/mri/p3sub-0025339_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025339/ses-1/mri/rp1sub-0025339_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025339/ses-1/mri/rp2sub-0025339_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025339/ses-1/mri/rp3sub-0025339_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025339/ses-1/mri/t_sub-0025339_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025339/ses-1/mri/t_sub-0025339_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/Jv/MD5E-s282--6390d21b44755b05614b0491c758ffa6.mat/MD5E-s282--6390d21b44755b05614b0491c758ffa6.mat

LMU_1/sub-0025339/ses-1/mri/thalamus_sub-0025339_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025339/ses-1/mri/thalamus_sub-0025339_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025339/ses-1/mri/wj_sub-0025339_ses-1_run-1_T1w.nii.gz

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