[DATALAD RUNCMD] Compute SWU_4/sub-0025863/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025863/ses-2/anat/sub-0025863_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025863/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025863/ses-2/label/catROI_sub-0025863_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/FQ/MD5E-s61210--e68a8b1fcd9f1efce4dc534683fba7a1.mat/MD5E-s61210--e68a8b1fcd9f1efce4dc534683fba7a1.mat

SWU_4/sub-0025863/ses-2/label/catROI_sub-0025863_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gg/9G/MD5E-s188930--3648cc39b0eb615aa5b107ba3c8f5cd8.xml/MD5E-s188930--3648cc39b0eb615aa5b107ba3c8f5cd8.xml

SWU_4/sub-0025863/ses-2/label/catROIs_sub-0025863_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/72/qk/MD5E-s120056--d79af5850e3ceff2a1bdb3a42529b161.mat/MD5E-s120056--d79af5850e3ceff2a1bdb3a42529b161.mat

SWU_4/sub-0025863/ses-2/label/catROIs_sub-0025863_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/Pm/MD5E-s332085--f20cd8ebeb00efac83f229c2b021e8c8.xml/MD5E-s332085--f20cd8ebeb00efac83f229c2b021e8c8.xml

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/X3/MD5E-s154012--14d32c6fe6c90bc828b0d57654e5d751.nii.gz/MD5E-s154012--14d32c6fe6c90bc828b0d57654e5d751.nii.gz

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/5j/MD5E-s172825--9ecde64aa7e6fa7015ff2f032c1327f3.nii.gz/MD5E-s172825--9ecde64aa7e6fa7015ff2f032c1327f3.nii.gz

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/9V/MD5E-s233178--fba2a8ad552caf93c2830d9fefff2310.nii.gz/MD5E-s233178--fba2a8ad552caf93c2830d9fefff2310.nii.gz

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025863/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/wg/MD5E-s259811--018ec5b708cc934287492f1722e3413f.nii.gz/MD5E-s259811--018ec5b708cc934287492f1722e3413f.nii.gz

SWU_4/sub-0025863/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025863/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/M7/MD5E-s24012--fb7b0bbfcda9f7fc1176ce7de5788d6d.nii.gz/MD5E-s24012--fb7b0bbfcda9f7fc1176ce7de5788d6d.nii.gz

SWU_4/sub-0025863/ses-2/mri/aal3_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025863/ses-2/mri/aal3_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/vz/MD5E-s174824--319739c0fc71ecda4511e1e22b3ebc85.nii.gz/MD5E-s174824--319739c0fc71ecda4511e1e22b3ebc85.nii.gz

SWU_4/sub-0025863/ses-2/mri/anatomy3_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025863/ses-2/mri/anatomy3_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/07/5F/MD5E-s126717--eba65c9aaf47655ae9249866249e8c53.nii.gz/MD5E-s126717--eba65c9aaf47655ae9249866249e8c53.nii.gz

SWU_4/sub-0025863/ses-2/mri/anon_misub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/pX/MD5E-s7642647--a51aa5b09e69c1351655516a71c914a8.nii.gz/MD5E-s7642647--a51aa5b09e69c1351655516a71c914a8.nii.gz

SWU_4/sub-0025863/ses-2/mri/anon_msub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M7/52/MD5E-s7615874--13d0fcce4c91d1ccae4177d3a99a3c10.nii.gz/MD5E-s7615874--13d0fcce4c91d1ccae4177d3a99a3c10.nii.gz

SWU_4/sub-0025863/ses-2/mri/cat_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/xJ/MD5E-s91647--8678c59484858c176897d1ae5e554e87.nii.gz/MD5E-s91647--8678c59484858c176897d1ae5e554e87.nii.gz

SWU_4/sub-0025863/ses-2/mri/cobra_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025863/ses-2/mri/cobra_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2J/FV/MD5E-s45807--8c999ef7218057fdfa40a1bcec1e0527.nii.gz/MD5E-s45807--8c999ef7218057fdfa40a1bcec1e0527.nii.gz

SWU_4/sub-0025863/ses-2/mri/hammers_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025863/ses-2/mri/hammers_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/5m/MD5E-s137021--17f1f557267fbb2de4dcee13f100819a.nii.gz/MD5E-s137021--17f1f557267fbb2de4dcee13f100819a.nii.gz

SWU_4/sub-0025863/ses-2/mri/ibsr_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025863/ses-2/mri/ibsr_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/jw/MD5E-s145386--868f719afdaea530c0acc755d157a950.nii.gz/MD5E-s145386--868f719afdaea530c0acc755d157a950.nii.gz

SWU_4/sub-0025863/ses-2/mri/it_sub-0025863_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/k1/MD5E-s284--c97ea188871ca97092419ab83f0c072a.mat/MD5E-s284--c97ea188871ca97092419ab83f0c072a.mat

SWU_4/sub-0025863/ses-2/mri/it_sub-0025863_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/pW/MD5E-s284--7e61e87601c34b07eea7d9627e168c8f.mat/MD5E-s284--7e61e87601c34b07eea7d9627e168c8f.mat

SWU_4/sub-0025863/ses-2/mri/iy_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/Fk/MD5E-s41328124--f76ea26e59ed20a67c172ebcf70fa306.nii.gz/MD5E-s41328124--f76ea26e59ed20a67c172ebcf70fa306.nii.gz

SWU_4/sub-0025863/ses-2/mri/julichbrain_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025863/ses-2/mri/julichbrain_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/XV/MD5E-s185116--e1121f0169bc8ff82e0b832f039bf87a.nii.gz/MD5E-s185116--e1121f0169bc8ff82e0b832f039bf87a.nii.gz

SWU_4/sub-0025863/ses-2/mri/lpba40_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025863/ses-2/mri/lpba40_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/Jj/MD5E-s134695--32a1a948bfcf1064ec3518551f34b4cf.nii.gz/MD5E-s134695--32a1a948bfcf1064ec3518551f34b4cf.nii.gz

SWU_4/sub-0025863/ses-2/mri/m0wp1sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/k5/MD5E-s2567835--1120469c20f81c90afb2c72f274f6173.nii.gz/MD5E-s2567835--1120469c20f81c90afb2c72f274f6173.nii.gz

SWU_4/sub-0025863/ses-2/mri/m0wp2sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/4F/MD5E-s2292326--0067191a3f7e546b01535387304cf75d.nii.gz/MD5E-s2292326--0067191a3f7e546b01535387304cf75d.nii.gz

SWU_4/sub-0025863/ses-2/mri/m0wp3sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/Jp/MD5E-s2495342--108d5b3b2a222f4536bf00681226eded.nii.gz/MD5E-s2495342--108d5b3b2a222f4536bf00681226eded.nii.gz

SWU_4/sub-0025863/ses-2/mri/mori_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025863/ses-2/mri/mori_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/98/MD5E-s161126--7a4551975f7194b6d6b9eeb3ad553cb2.nii.gz/MD5E-s161126--7a4551975f7194b6d6b9eeb3ad553cb2.nii.gz

SWU_4/sub-0025863/ses-2/mri/mwp1sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/39/MD5E-s2577783--038999a4198a47984b9cd4340f6f51ef.nii.gz/MD5E-s2577783--038999a4198a47984b9cd4340f6f51ef.nii.gz

SWU_4/sub-0025863/ses-2/mri/mwp2sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q0/pv/MD5E-s2292041--f94515e995c7cff8f1d493b32ee07069.nii.gz/MD5E-s2292041--f94515e995c7cff8f1d493b32ee07069.nii.gz

SWU_4/sub-0025863/ses-2/mri/mwp3sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/9G/MD5E-s2492687--cba3a8d4ddca37e6b42e5916954767e6.nii.gz/MD5E-s2492687--cba3a8d4ddca37e6b42e5916954767e6.nii.gz

SWU_4/sub-0025863/ses-2/mri/neuromorphometrics_sub-0025863_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025863/ses-2/mri/neuromorphometrics_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025863/ses-2/mri/p0sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/Wj/MD5E-s575907--1b10adb260718a039662bcbf991412d0.nii.gz/MD5E-s575907--1b10adb260718a039662bcbf991412d0.nii.gz

SWU_4/sub-0025863/ses-2/mri/p1sub-0025863_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025863/ses-2/mri/p2sub-0025863_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025863/ses-2/mri/p3sub-0025863_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025863/ses-2/mri/rp1sub-0025863_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025863/ses-2/mri/rp2sub-0025863_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025863/ses-2/mri/rp3sub-0025863_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025863/ses-2/mri/t_sub-0025863_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025863/ses-2/mri/t_sub-0025863_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K6/57/MD5E-s283--4a12da8bd48f9d29f7652925b1520a93.mat/MD5E-s283--4a12da8bd48f9d29f7652925b1520a93.mat

SWU_4/sub-0025863/ses-2/mri/thalamus_sub-0025863_ses-2_run-1_T1w.csv

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SWU_4/sub-0025863/ses-2/mri/thalamus_sub-0025863_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025863/ses-2/mri/wj_sub-0025863_ses-2_run-1_T1w.nii.gz

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