[DATALAD RUNCMD] Compute BNU_2/sub-0025946/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025946/ses-1/anat/sub-0025946_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025946/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025946/ses-1/label/catROI_sub-0025946_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/71/MD5E-s57904--bea8e9f66ac142dd528bb7a832d8f567.mat/MD5E-s57904--bea8e9f66ac142dd528bb7a832d8f567.mat

BNU_2/sub-0025946/ses-1/label/catROI_sub-0025946_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/6m/MD5E-s188792--d3d6a3c7a76a2c516426147d4114269c.xml/MD5E-s188792--d3d6a3c7a76a2c516426147d4114269c.xml

BNU_2/sub-0025946/ses-1/label/catROIs_sub-0025946_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/F4/MD5E-s120049--fa84f7e409f2b00bb9746e2c23bdd609.mat/MD5E-s120049--fa84f7e409f2b00bb9746e2c23bdd609.mat

BNU_2/sub-0025946/ses-1/label/catROIs_sub-0025946_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/8W/MD5E-s332069--fea2be7c02f66a53161b699e572e57ca.xml/MD5E-s332069--fea2be7c02f66a53161b699e572e57ca.xml

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/0G/MD5E-s146648--9c57af53bd6a1c75db15b3046cdda1b1.nii.gz/MD5E-s146648--9c57af53bd6a1c75db15b3046cdda1b1.nii.gz

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/FZ/MD5E-s162527--c02d761d5dd0feebfde4ebeb4a22439e.nii.gz/MD5E-s162527--c02d761d5dd0feebfde4ebeb4a22439e.nii.gz

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/48/MD5E-s217909--425ef8d97b5f9774e1daa14d2ed0261f.nii.gz/MD5E-s217909--425ef8d97b5f9774e1daa14d2ed0261f.nii.gz

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025946/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xM/JP/MD5E-s241420--d84101df40b196cba22c8b8ea25be2b9.nii.gz/MD5E-s241420--d84101df40b196cba22c8b8ea25be2b9.nii.gz

BNU_2/sub-0025946/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025946/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/F4/MD5E-s19869--bbe13e0fa6278bb672f7cc5887525f54.nii.gz/MD5E-s19869--bbe13e0fa6278bb672f7cc5887525f54.nii.gz

BNU_2/sub-0025946/ses-1/mri/aal3_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025946/ses-1/mri/aal3_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/mv/MD5E-s166154--3aa2ffbfea58b4f457c4a79996c2f9ab.nii.gz/MD5E-s166154--3aa2ffbfea58b4f457c4a79996c2f9ab.nii.gz

BNU_2/sub-0025946/ses-1/mri/anatomy3_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025946/ses-1/mri/anatomy3_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/03/MD5E-s117023--57183799b59509a6ceedb64923524ab6.nii.gz/MD5E-s117023--57183799b59509a6ceedb64923524ab6.nii.gz

BNU_2/sub-0025946/ses-1/mri/anon_misub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/9k/MD5E-s4080878--0d110a8b312009d197c33b8d6a5384fc.nii.gz/MD5E-s4080878--0d110a8b312009d197c33b8d6a5384fc.nii.gz

BNU_2/sub-0025946/ses-1/mri/anon_msub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/xf/MD5E-s6943024--7acf04d315c0f7b7dbaa5cfc625230a0.nii.gz/MD5E-s6943024--7acf04d315c0f7b7dbaa5cfc625230a0.nii.gz

BNU_2/sub-0025946/ses-1/mri/cat_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/89/MD5E-s90343--75a10fbcaa08b65f034263643feddf1f.nii.gz/MD5E-s90343--75a10fbcaa08b65f034263643feddf1f.nii.gz

BNU_2/sub-0025946/ses-1/mri/cobra_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025946/ses-1/mri/cobra_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/0x/MD5E-s43924--f53549af0175cf7c471351414a49a47b.nii.gz/MD5E-s43924--f53549af0175cf7c471351414a49a47b.nii.gz

BNU_2/sub-0025946/ses-1/mri/hammers_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025946/ses-1/mri/hammers_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/fM/MD5E-s131969--0b0ee94216422297c91a811b48749cee.nii.gz/MD5E-s131969--0b0ee94216422297c91a811b48749cee.nii.gz

BNU_2/sub-0025946/ses-1/mri/ibsr_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025946/ses-1/mri/ibsr_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/Z3/MD5E-s137722--a6d7f9f0aa181521b7c3306570527946.nii.gz/MD5E-s137722--a6d7f9f0aa181521b7c3306570527946.nii.gz

BNU_2/sub-0025946/ses-1/mri/it_sub-0025946_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/Mf/MD5E-s283--fccd8ceb4bfdf76ffee354a3de3b9a45.mat/MD5E-s283--fccd8ceb4bfdf76ffee354a3de3b9a45.mat

BNU_2/sub-0025946/ses-1/mri/it_sub-0025946_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/58/MD5E-s282--cd219790894d67936c0a96aba50d5976.mat/MD5E-s282--cd219790894d67936c0a96aba50d5976.mat

BNU_2/sub-0025946/ses-1/mri/iy_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/XV/MD5E-s34680884--167fdda309258ed29878db8e6670df63.nii.gz/MD5E-s34680884--167fdda309258ed29878db8e6670df63.nii.gz

BNU_2/sub-0025946/ses-1/mri/julichbrain_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025946/ses-1/mri/julichbrain_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/JX/MD5E-s174907--d21f8184901e810b890c582e7870be47.nii.gz/MD5E-s174907--d21f8184901e810b890c582e7870be47.nii.gz

BNU_2/sub-0025946/ses-1/mri/lpba40_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025946/ses-1/mri/lpba40_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/36/MD5E-s128712--82e57348233833c319f8c682d6169b25.nii.gz/MD5E-s128712--82e57348233833c319f8c682d6169b25.nii.gz

BNU_2/sub-0025946/ses-1/mri/m0wp1sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/mZ/MD5E-s2594042--3c6291ed8fbcc21de666e2e37f4021f7.nii.gz/MD5E-s2594042--3c6291ed8fbcc21de666e2e37f4021f7.nii.gz

BNU_2/sub-0025946/ses-1/mri/m0wp2sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/m2/MD5E-s2283759--5732b7bb8c5f45cb436bb3e622446654.nii.gz/MD5E-s2283759--5732b7bb8c5f45cb436bb3e622446654.nii.gz

BNU_2/sub-0025946/ses-1/mri/m0wp3sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5p/3q/MD5E-s2571554--995546841a178ff9d9b3d1023d46e646.nii.gz/MD5E-s2571554--995546841a178ff9d9b3d1023d46e646.nii.gz

BNU_2/sub-0025946/ses-1/mri/mori_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025946/ses-1/mri/mori_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/x3/MD5E-s153483--737af1be1d1af82389841ca9a74787f0.nii.gz/MD5E-s153483--737af1be1d1af82389841ca9a74787f0.nii.gz

BNU_2/sub-0025946/ses-1/mri/mwp1sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/8Z/MD5E-s2595903--00201a0ce1aac5ba074d2a33c7a760b5.nii.gz/MD5E-s2595903--00201a0ce1aac5ba074d2a33c7a760b5.nii.gz

BNU_2/sub-0025946/ses-1/mri/mwp2sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fg/JQ/MD5E-s2281482--fea83c7ca47432d20d0cd629e9b05ea6.nii.gz/MD5E-s2281482--fea83c7ca47432d20d0cd629e9b05ea6.nii.gz

BNU_2/sub-0025946/ses-1/mri/mwp3sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/wp/MD5E-s2568685--486ab2d380fcd2083b69990ea00f82b5.nii.gz/MD5E-s2568685--486ab2d380fcd2083b69990ea00f82b5.nii.gz

BNU_2/sub-0025946/ses-1/mri/neuromorphometrics_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025946/ses-1/mri/neuromorphometrics_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025946/ses-1/mri/p0sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1z/74/MD5E-s780177--b4393ced5c55525c9682da050bb8faa8.nii.gz/MD5E-s780177--b4393ced5c55525c9682da050bb8faa8.nii.gz

BNU_2/sub-0025946/ses-1/mri/p1sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/j1/MD5E-s788816--dd6af999bf32a8e94184dd997cfeb6e5.nii.gz/MD5E-s788816--dd6af999bf32a8e94184dd997cfeb6e5.nii.gz

BNU_2/sub-0025946/ses-1/mri/p2sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2M/mp/MD5E-s515189--eafff2c2da80d00b6607a92487347194.nii.gz/MD5E-s515189--eafff2c2da80d00b6607a92487347194.nii.gz

BNU_2/sub-0025946/ses-1/mri/p3sub-0025946_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025946/ses-1/mri/rp1sub-0025946_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025946/ses-1/mri/rp2sub-0025946_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025946/ses-1/mri/rp3sub-0025946_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025946/ses-1/mri/t_sub-0025946_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/GQ/MD5E-s283--0ce1bd855087258989e5ab89a6ebd334.mat/MD5E-s283--0ce1bd855087258989e5ab89a6ebd334.mat

BNU_2/sub-0025946/ses-1/mri/t_sub-0025946_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f5/Zp/MD5E-s284--6340dc417f66e926b6e74070906f37df.mat/MD5E-s284--6340dc417f66e926b6e74070906f37df.mat

BNU_2/sub-0025946/ses-1/mri/thalamus_sub-0025946_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025946/ses-1/mri/thalamus_sub-0025946_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025946/ses-1/mri/wj_sub-0025946_ses-1_run-1_T1w.nii.gz

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