[DATALAD RUNCMD] Compute HNU_1/sub-0025436/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/HNU_1/sub-0025436/ses-2/anat/sub-0025436_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "HNU_1/sub-0025436/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

HNU_1/sub-0025436/ses-2/label/catROI_sub-0025436_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/8q/MD5E-s61424--3fa8e7b4e179186b524f5096497862ee.mat/MD5E-s61424--3fa8e7b4e179186b524f5096497862ee.mat

HNU_1/sub-0025436/ses-2/label/catROI_sub-0025436_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/7X/MD5E-s188948--e0853fcb77bacff5b6e2f4c1388f25bd.xml/MD5E-s188948--e0853fcb77bacff5b6e2f4c1388f25bd.xml

HNU_1/sub-0025436/ses-2/label/catROIs_sub-0025436_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jm/4j/MD5E-s120038--dfeac0b7ddd986086576946bfe9fb18c.mat/MD5E-s120038--dfeac0b7ddd986086576946bfe9fb18c.mat

HNU_1/sub-0025436/ses-2/label/catROIs_sub-0025436_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/Wz/MD5E-s332136--78cee8c92c1c8221bdfd852ef89140fe.xml/MD5E-s332136--78cee8c92c1c8221bdfd852ef89140fe.xml

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/wX/MD5E-s182885--ee0856505d3d7549824fc8e62f74210d.nii.gz/MD5E-s182885--ee0856505d3d7549824fc8e62f74210d.nii.gz

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/Vk/MD5E-s207385--b5b284888e9815fa870a12351b4d139e.nii.gz/MD5E-s207385--b5b284888e9815fa870a12351b4d139e.nii.gz

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Z/XK/MD5E-s278872--09139c63c868e0a4431ae21aea6d2d91.nii.gz/MD5E-s278872--09139c63c868e0a4431ae21aea6d2d91.nii.gz

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

HNU_1/sub-0025436/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/zq/MD5E-s310707--5ddeb9f6bba91ad66cde8b5dcfbdd1a7.nii.gz/MD5E-s310707--5ddeb9f6bba91ad66cde8b5dcfbdd1a7.nii.gz

HNU_1/sub-0025436/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

HNU_1/sub-0025436/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/X7/MD5E-s25385--3ec1a90c4368c3937130016cb7b4ff49.nii.gz/MD5E-s25385--3ec1a90c4368c3937130016cb7b4ff49.nii.gz

HNU_1/sub-0025436/ses-2/mri/aal3_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

HNU_1/sub-0025436/ses-2/mri/aal3_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/50/ZG/MD5E-s208260--9b4db64e5137131d0c4cab29d34dcb9e.nii.gz/MD5E-s208260--9b4db64e5137131d0c4cab29d34dcb9e.nii.gz

HNU_1/sub-0025436/ses-2/mri/anatomy3_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

HNU_1/sub-0025436/ses-2/mri/anatomy3_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/j1/MD5E-s152178--b793945e1e45269d226ab5d3948bf1a7.nii.gz/MD5E-s152178--b793945e1e45269d226ab5d3948bf1a7.nii.gz

HNU_1/sub-0025436/ses-2/mri/anon_misub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5P/Kg/MD5E-s5845079--b24f1f7b9503cea425273aadf38905c4.nii.gz/MD5E-s5845079--b24f1f7b9503cea425273aadf38905c4.nii.gz

HNU_1/sub-0025436/ses-2/mri/anon_msub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/FM/MD5E-s11003535--d00772f7d4da2fb0783fadb5278f0d6a.nii.gz/MD5E-s11003535--d00772f7d4da2fb0783fadb5278f0d6a.nii.gz

HNU_1/sub-0025436/ses-2/mri/cat_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JW/Zw/MD5E-s111189--ba9a30217c3ab1f3d77b680ef6b3e831.nii.gz/MD5E-s111189--ba9a30217c3ab1f3d77b680ef6b3e831.nii.gz

HNU_1/sub-0025436/ses-2/mri/cobra_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

HNU_1/sub-0025436/ses-2/mri/cobra_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/82/1K/MD5E-s52517--28c8fbd5b6b0f7773a31b6c7a37d8bb1.nii.gz/MD5E-s52517--28c8fbd5b6b0f7773a31b6c7a37d8bb1.nii.gz

HNU_1/sub-0025436/ses-2/mri/hammers_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

HNU_1/sub-0025436/ses-2/mri/hammers_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/GW/MD5E-s165386--32b756b565610d3246a6fe28d1011c6f.nii.gz/MD5E-s165386--32b756b565610d3246a6fe28d1011c6f.nii.gz

HNU_1/sub-0025436/ses-2/mri/ibsr_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

HNU_1/sub-0025436/ses-2/mri/ibsr_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/5m/MD5E-s171881--718e3682cf05b8829e3ecdbdfbd0e785.nii.gz/MD5E-s171881--718e3682cf05b8829e3ecdbdfbd0e785.nii.gz

HNU_1/sub-0025436/ses-2/mri/it_sub-0025436_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/Qp/MD5E-s283--db0afac20609c8f692a0be37e7f460b3.mat/MD5E-s283--db0afac20609c8f692a0be37e7f460b3.mat

HNU_1/sub-0025436/ses-2/mri/it_sub-0025436_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/FW/MD5E-s283--6ae5515c2447c910e80abf1b8dfc788f.mat/MD5E-s283--6ae5515c2447c910e80abf1b8dfc788f.mat

HNU_1/sub-0025436/ses-2/mri/iy_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/wp/MD5E-s51584488--3a0c548c42e4155c6cbfdf5f3d39befd.nii.gz/MD5E-s51584488--3a0c548c42e4155c6cbfdf5f3d39befd.nii.gz

HNU_1/sub-0025436/ses-2/mri/julichbrain_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

HNU_1/sub-0025436/ses-2/mri/julichbrain_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/09/MD5E-s222650--427a2b7562849eda666d73130c99bf5e.nii.gz/MD5E-s222650--427a2b7562849eda666d73130c99bf5e.nii.gz

HNU_1/sub-0025436/ses-2/mri/lpba40_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

HNU_1/sub-0025436/ses-2/mri/lpba40_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K4/5M/MD5E-s160203--340d39919cedb57bb11251dad2d21539.nii.gz/MD5E-s160203--340d39919cedb57bb11251dad2d21539.nii.gz

HNU_1/sub-0025436/ses-2/mri/m0wp1sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/M8/MD5E-s2588764--9e7b10bf1cc6b205a7a86d3abfa8045f.nii.gz/MD5E-s2588764--9e7b10bf1cc6b205a7a86d3abfa8045f.nii.gz

HNU_1/sub-0025436/ses-2/mri/m0wp2sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/mW/MD5E-s2356225--164d06da17c91c91e3507cf517a5f7e2.nii.gz/MD5E-s2356225--164d06da17c91c91e3507cf517a5f7e2.nii.gz

HNU_1/sub-0025436/ses-2/mri/m0wp3sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/31/zG/MD5E-s2606598--b0b7e142cfbce3703026258c82844bda.nii.gz/MD5E-s2606598--b0b7e142cfbce3703026258c82844bda.nii.gz

HNU_1/sub-0025436/ses-2/mri/mori_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

HNU_1/sub-0025436/ses-2/mri/mori_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/GW/MD5E-s190823--a156326bddd59421956bd4c3ce2a325b.nii.gz/MD5E-s190823--a156326bddd59421956bd4c3ce2a325b.nii.gz

HNU_1/sub-0025436/ses-2/mri/mwp1sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/04/MD5E-s2592310--a27d9fdcd8c70d017551087e6932e6ca.nii.gz/MD5E-s2592310--a27d9fdcd8c70d017551087e6932e6ca.nii.gz

HNU_1/sub-0025436/ses-2/mri/mwp2sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/zK/MD5E-s2355609--53dc9c854e83b5a1b0b43532eda134fd.nii.gz/MD5E-s2355609--53dc9c854e83b5a1b0b43532eda134fd.nii.gz

HNU_1/sub-0025436/ses-2/mri/mwp3sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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HNU_1/sub-0025436/ses-2/mri/neuromorphometrics_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

HNU_1/sub-0025436/ses-2/mri/neuromorphometrics_sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/gP/MD5E-s224858--2065f8531c7335d8812a633b9e4b8a4d.nii.gz/MD5E-s224858--2065f8531c7335d8812a633b9e4b8a4d.nii.gz

HNU_1/sub-0025436/ses-2/mri/p0sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/VV/MD5E-s738720--c46049fb816725025bb883ef4913e4ce.nii.gz/MD5E-s738720--c46049fb816725025bb883ef4913e4ce.nii.gz

HNU_1/sub-0025436/ses-2/mri/p1sub-0025436_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/wq/MD5E-s782406--862ca810f426b169ca7b848f425558fe.nii.gz/MD5E-s782406--862ca810f426b169ca7b848f425558fe.nii.gz

HNU_1/sub-0025436/ses-2/mri/p2sub-0025436_ses-2_run-1_T1w.nii.gz

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HNU_1/sub-0025436/ses-2/mri/p3sub-0025436_ses-2_run-1_T1w.nii.gz

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HNU_1/sub-0025436/ses-2/mri/rp1sub-0025436_ses-2_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025436/ses-2/mri/rp2sub-0025436_ses-2_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025436/ses-2/mri/rp3sub-0025436_ses-2_run-1_T1w_affine.nii.gz

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HNU_1/sub-0025436/ses-2/mri/t_sub-0025436_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pJ/1V/MD5E-s281--6d087063733bbd7c7b08baae6f2ecf34.mat/MD5E-s281--6d087063733bbd7c7b08baae6f2ecf34.mat

HNU_1/sub-0025436/ses-2/mri/t_sub-0025436_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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HNU_1/sub-0025436/ses-2/mri/thalamus_sub-0025436_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

HNU_1/sub-0025436/ses-2/mri/thalamus_sub-0025436_ses-2_run-1_T1w.nii.gz

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