[DATALAD RUNCMD] Compute NYU_2/sub-0025170/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025170/ses-1/anat/sub-0025170_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025170/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025170/ses-1/label/catROI_sub-0025170_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/52/vz/MD5E-s57718--c34f13946a3ccce78a54b3cb73205791.mat/MD5E-s57718--c34f13946a3ccce78a54b3cb73205791.mat

NYU_2/sub-0025170/ses-1/label/catROI_sub-0025170_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/zP/MD5E-s189028--c1c73a173d3ef17279d3dfe1d28cbd64.xml/MD5E-s189028--c1c73a173d3ef17279d3dfe1d28cbd64.xml

NYU_2/sub-0025170/ses-1/label/catROIs_sub-0025170_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/Z5/MD5E-s120199--aff3df26e773e7120b33382bb0e83f8a.mat/MD5E-s120199--aff3df26e773e7120b33382bb0e83f8a.mat

NYU_2/sub-0025170/ses-1/label/catROIs_sub-0025170_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vm/Zp/MD5E-s332120--de63fe3d31d8c3aa16e59598fe9a33ae.xml/MD5E-s332120--de63fe3d31d8c3aa16e59598fe9a33ae.xml

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2J/7m/MD5E-s137196--878a7b0c36314e4f31fcf129816ebfd7.nii.gz/MD5E-s137196--878a7b0c36314e4f31fcf129816ebfd7.nii.gz

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/Vm/MD5E-s153165--fba966ae3a4bd76101f08f8e7317db0b.nii.gz/MD5E-s153165--fba966ae3a4bd76101f08f8e7317db0b.nii.gz

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/K2/MD5E-s206282--aff4c097ad29ed4eba5cf47aa23e3451.nii.gz/MD5E-s206282--aff4c097ad29ed4eba5cf47aa23e3451.nii.gz

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025170/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/40/QJ/MD5E-s228343--5146b8a3d99eacfe1fd0d58a77b03219.nii.gz/MD5E-s228343--5146b8a3d99eacfe1fd0d58a77b03219.nii.gz

NYU_2/sub-0025170/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025170/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zM/qp/MD5E-s18641--1722950808623f2767a93bc4fa393f4f.nii.gz/MD5E-s18641--1722950808623f2767a93bc4fa393f4f.nii.gz

NYU_2/sub-0025170/ses-1/mri/aal3_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025170/ses-1/mri/aal3_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jP/qQ/MD5E-s155206--995a0dfa5d658affe1cf734482e6b38d.nii.gz/MD5E-s155206--995a0dfa5d658affe1cf734482e6b38d.nii.gz

NYU_2/sub-0025170/ses-1/mri/anatomy3_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025170/ses-1/mri/anatomy3_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/P2/MD5E-s108968--1f18920ff3de314b8024d8c889896d40.nii.gz/MD5E-s108968--1f18920ff3de314b8024d8c889896d40.nii.gz

NYU_2/sub-0025170/ses-1/mri/anon_misub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wf/Mq/MD5E-s3784753--8d54e2adb27ab3e4b192d4750e5df969.nii.gz/MD5E-s3784753--8d54e2adb27ab3e4b192d4750e5df969.nii.gz

NYU_2/sub-0025170/ses-1/mri/anon_msub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/w4/MD5E-s7049742--08042f6e146c8c30dc7456ea72215123.nii.gz/MD5E-s7049742--08042f6e146c8c30dc7456ea72215123.nii.gz

NYU_2/sub-0025170/ses-1/mri/cat_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/Kp/MD5E-s80716--0c2a354abfcef197adb8160e0388bb7d.nii.gz/MD5E-s80716--0c2a354abfcef197adb8160e0388bb7d.nii.gz

NYU_2/sub-0025170/ses-1/mri/cobra_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025170/ses-1/mri/cobra_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wk/fv/MD5E-s36640--81fec106c52d0f29c3690e3ed6610744.nii.gz/MD5E-s36640--81fec106c52d0f29c3690e3ed6610744.nii.gz

NYU_2/sub-0025170/ses-1/mri/hammers_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025170/ses-1/mri/hammers_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0g/x6/MD5E-s120268--1a62a78aedb5db066152b99147e5ed8b.nii.gz/MD5E-s120268--1a62a78aedb5db066152b99147e5ed8b.nii.gz

NYU_2/sub-0025170/ses-1/mri/ibsr_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025170/ses-1/mri/ibsr_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XP/9Z/MD5E-s126269--4a5657c761174b9f35814ea7ce2a3927.nii.gz/MD5E-s126269--4a5657c761174b9f35814ea7ce2a3927.nii.gz

NYU_2/sub-0025170/ses-1/mri/it_sub-0025170_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/4m/MD5E-s282--bcb32c4023967d5f76f2ba4f257d4494.mat/MD5E-s282--bcb32c4023967d5f76f2ba4f257d4494.mat

NYU_2/sub-0025170/ses-1/mri/it_sub-0025170_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/KK/MD5E-s282--de000d3c49155f2b52eb46c33e8ddf2a.mat/MD5E-s282--de000d3c49155f2b52eb46c33e8ddf2a.mat

NYU_2/sub-0025170/ses-1/mri/iy_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/Gm/MD5E-s32729969--6ff3a8eb769d3dda00cad6ccafbbd60a.nii.gz/MD5E-s32729969--6ff3a8eb769d3dda00cad6ccafbbd60a.nii.gz

NYU_2/sub-0025170/ses-1/mri/julichbrain_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025170/ses-1/mri/julichbrain_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/mk/MD5E-s161811--991c2f6f12b0bffb5bc553ed70f7cda0.nii.gz/MD5E-s161811--991c2f6f12b0bffb5bc553ed70f7cda0.nii.gz

NYU_2/sub-0025170/ses-1/mri/lpba40_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025170/ses-1/mri/lpba40_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/03/5P/MD5E-s118229--d6d9dd6c4b2b2377b66d08c17a1161fa.nii.gz/MD5E-s118229--d6d9dd6c4b2b2377b66d08c17a1161fa.nii.gz

NYU_2/sub-0025170/ses-1/mri/m0wp1sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4J/wj/MD5E-s2587614--ec0aaa48a02e1c6a2f216aea60a630e0.nii.gz/MD5E-s2587614--ec0aaa48a02e1c6a2f216aea60a630e0.nii.gz

NYU_2/sub-0025170/ses-1/mri/m0wp2sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/PM/MD5E-s2303701--28e6e4b3ab6280aebcae7af62edc89a0.nii.gz/MD5E-s2303701--28e6e4b3ab6280aebcae7af62edc89a0.nii.gz

NYU_2/sub-0025170/ses-1/mri/m0wp3sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/Jv/MD5E-s2538908--53263f759f0a3943b21baed79927ac93.nii.gz/MD5E-s2538908--53263f759f0a3943b21baed79927ac93.nii.gz

NYU_2/sub-0025170/ses-1/mri/mori_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025170/ses-1/mri/mori_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/FZ/MD5E-s141849--8dbfcbee5025cf2e5ec20243b762d8a8.nii.gz/MD5E-s141849--8dbfcbee5025cf2e5ec20243b762d8a8.nii.gz

NYU_2/sub-0025170/ses-1/mri/mwp1sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/F6/MD5E-s2595183--5060c997e66dbd5e12f2c2e3fa8558a6.nii.gz/MD5E-s2595183--5060c997e66dbd5e12f2c2e3fa8558a6.nii.gz

NYU_2/sub-0025170/ses-1/mri/mwp2sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J5/Zk/MD5E-s2306403--051088b4d5264a75ab914e02d25ab078.nii.gz/MD5E-s2306403--051088b4d5264a75ab914e02d25ab078.nii.gz

NYU_2/sub-0025170/ses-1/mri/mwp3sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/wZ/MD5E-s2534980--ab11b85263ba5cf4a6fb6724137b3639.nii.gz/MD5E-s2534980--ab11b85263ba5cf4a6fb6724137b3639.nii.gz

NYU_2/sub-0025170/ses-1/mri/neuromorphometrics_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025170/ses-1/mri/neuromorphometrics_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025170/ses-1/mri/p0sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/pg/MD5E-s690719--3ee033498a0d28f316b2c323add228b2.nii.gz/MD5E-s690719--3ee033498a0d28f316b2c323add228b2.nii.gz

NYU_2/sub-0025170/ses-1/mri/p1sub-0025170_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025170/ses-1/mri/p2sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/Fz/MD5E-s485086--fc259843f7ecc4d2b8a3ef80af78f172.nii.gz/MD5E-s485086--fc259843f7ecc4d2b8a3ef80af78f172.nii.gz

NYU_2/sub-0025170/ses-1/mri/p3sub-0025170_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025170/ses-1/mri/rp1sub-0025170_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025170/ses-1/mri/rp2sub-0025170_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025170/ses-1/mri/rp3sub-0025170_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025170/ses-1/mri/t_sub-0025170_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025170/ses-1/mri/t_sub-0025170_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/pq/MD5E-s283--61b6fb1522e9d30d4bed76e0b77e92cc.mat/MD5E-s283--61b6fb1522e9d30d4bed76e0b77e92cc.mat

NYU_2/sub-0025170/ses-1/mri/thalamus_sub-0025170_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025170/ses-1/mri/thalamus_sub-0025170_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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