[DATALAD RUNCMD] Compute SWU_4/sub-0025772/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025772/ses-2/anat/sub-0025772_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025772/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025772/ses-2/label/catROI_sub-0025772_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/42/w8/MD5E-s61336--b1941772330e2c0ac41ced458457d038.mat/MD5E-s61336--b1941772330e2c0ac41ced458457d038.mat

SWU_4/sub-0025772/ses-2/label/catROI_sub-0025772_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/XM/MD5E-s188806--11863c7560b4f0cd32ceb6022157f618.xml/MD5E-s188806--11863c7560b4f0cd32ceb6022157f618.xml

SWU_4/sub-0025772/ses-2/label/catROIs_sub-0025772_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xP/0p/MD5E-s120140--2c32b08f4947aabf02e4646aecb7a4fe.mat/MD5E-s120140--2c32b08f4947aabf02e4646aecb7a4fe.mat

SWU_4/sub-0025772/ses-2/label/catROIs_sub-0025772_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/75/67/MD5E-s332063--f7e9d570a4c18fccf7936178fb5429bd.xml/MD5E-s332063--f7e9d570a4c18fccf7936178fb5429bd.xml

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/28/Vp/MD5E-s172042--d3927b425f57e316594de0d2ac7d0070.nii.gz/MD5E-s172042--d3927b425f57e316594de0d2ac7d0070.nii.gz

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zx/MD5E-s191395--50dad8c67e9685c3de66c9e1f2edeef3.nii.gz/MD5E-s191395--50dad8c67e9685c3de66c9e1f2edeef3.nii.gz

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/19/MD5E-s258392--cd9552ea334063b5319a64c2e35cadb5.nii.gz/MD5E-s258392--cd9552ea334063b5319a64c2e35cadb5.nii.gz

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025772/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x2/mZ/MD5E-s286016--768dd41941331cebaa72505c825d9dad.nii.gz/MD5E-s286016--768dd41941331cebaa72505c825d9dad.nii.gz

SWU_4/sub-0025772/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025772/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/MP/MD5E-s25583--ad20b07868e8ed732a094a2c8508a432.nii.gz/MD5E-s25583--ad20b07868e8ed732a094a2c8508a432.nii.gz

SWU_4/sub-0025772/ses-2/mri/aal3_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025772/ses-2/mri/aal3_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/03/g8/MD5E-s192533--783df82e318b6e36768a9d4adb17833a.nii.gz/MD5E-s192533--783df82e318b6e36768a9d4adb17833a.nii.gz

SWU_4/sub-0025772/ses-2/mri/anatomy3_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025772/ses-2/mri/anatomy3_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/16/MD5E-s141093--28164eb808532a049006ee6207f5790b.nii.gz/MD5E-s141093--28164eb808532a049006ee6207f5790b.nii.gz

SWU_4/sub-0025772/ses-2/mri/anon_misub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/Fw/MD5E-s9979380--ec6d424361e64ef359d85428f8134a2b.nii.gz/MD5E-s9979380--ec6d424361e64ef359d85428f8134a2b.nii.gz

SWU_4/sub-0025772/ses-2/mri/anon_msub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gp/1j/MD5E-s11393749--e813079a4a76e6e50587f4c5ac0cdd4f.nii.gz/MD5E-s11393749--e813079a4a76e6e50587f4c5ac0cdd4f.nii.gz

SWU_4/sub-0025772/ses-2/mri/cat_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/GF/MD5E-s105745--3598340fdb58218fea89b8d2397b5cd0.nii.gz/MD5E-s105745--3598340fdb58218fea89b8d2397b5cd0.nii.gz

SWU_4/sub-0025772/ses-2/mri/cobra_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025772/ses-2/mri/cobra_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/wV/MD5E-s51025--bfb68213d8eb4e6c0a80cfc051aa8203.nii.gz/MD5E-s51025--bfb68213d8eb4e6c0a80cfc051aa8203.nii.gz

SWU_4/sub-0025772/ses-2/mri/hammers_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025772/ses-2/mri/hammers_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/Qz/MD5E-s153525--1afb2a3522a21b37864a015ed2407e26.nii.gz/MD5E-s153525--1afb2a3522a21b37864a015ed2407e26.nii.gz

SWU_4/sub-0025772/ses-2/mri/ibsr_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025772/ses-2/mri/ibsr_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/m4/MD5E-s161569--0262c35ef517161eccd67ec75f72229f.nii.gz/MD5E-s161569--0262c35ef517161eccd67ec75f72229f.nii.gz

SWU_4/sub-0025772/ses-2/mri/it_sub-0025772_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/Gv/MD5E-s283--96867ec8c46bf142be27fda6efa611b1.mat/MD5E-s283--96867ec8c46bf142be27fda6efa611b1.mat

SWU_4/sub-0025772/ses-2/mri/it_sub-0025772_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/Wq/MD5E-s284--d73ba9485c0c37f6e6b50bd0d1993123.mat/MD5E-s284--d73ba9485c0c37f6e6b50bd0d1993123.mat

SWU_4/sub-0025772/ses-2/mri/iy_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/0V/MD5E-s48073885--a3e6607ab0e05cab3d2fe7ffac995458.nii.gz/MD5E-s48073885--a3e6607ab0e05cab3d2fe7ffac995458.nii.gz

SWU_4/sub-0025772/ses-2/mri/julichbrain_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025772/ses-2/mri/julichbrain_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gp/Fg/MD5E-s206908--2e84d97b58ffa0629f1e2c4cb2d74f2d.nii.gz/MD5E-s206908--2e84d97b58ffa0629f1e2c4cb2d74f2d.nii.gz

SWU_4/sub-0025772/ses-2/mri/lpba40_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025772/ses-2/mri/lpba40_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/zZ/MD5E-s148583--674cce48e0a210728040139a3fce169a.nii.gz/MD5E-s148583--674cce48e0a210728040139a3fce169a.nii.gz

SWU_4/sub-0025772/ses-2/mri/m0wp1sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/Xm/MD5E-s2582178--93f0a12f2889e997a2c12e604f9896e4.nii.gz/MD5E-s2582178--93f0a12f2889e997a2c12e604f9896e4.nii.gz

SWU_4/sub-0025772/ses-2/mri/m0wp2sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q7/7f/MD5E-s2324114--763514360094332a2cbfcfd92b765972.nii.gz/MD5E-s2324114--763514360094332a2cbfcfd92b765972.nii.gz

SWU_4/sub-0025772/ses-2/mri/m0wp3sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/45/MD5E-s2607197--487ca58a7e0586fe0f5bc6cd84b6baa4.nii.gz/MD5E-s2607197--487ca58a7e0586fe0f5bc6cd84b6baa4.nii.gz

SWU_4/sub-0025772/ses-2/mri/mori_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025772/ses-2/mri/mori_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/5Q/MD5E-s180215--84df43e3e4df34f818b030a6a4f9e2e5.nii.gz/MD5E-s180215--84df43e3e4df34f818b030a6a4f9e2e5.nii.gz

SWU_4/sub-0025772/ses-2/mri/mwp1sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/Mm/MD5E-s2585765--2a241149b60e93d14de43b8d4dbb56f4.nii.gz/MD5E-s2585765--2a241149b60e93d14de43b8d4dbb56f4.nii.gz

SWU_4/sub-0025772/ses-2/mri/mwp2sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/V8/MD5E-s2322824--b261bc5eef763bee790e331cb90e53d3.nii.gz/MD5E-s2322824--b261bc5eef763bee790e331cb90e53d3.nii.gz

SWU_4/sub-0025772/ses-2/mri/mwp3sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/jx/MD5E-s2607033--7e59af29b77d3f92d5d376390009143a.nii.gz/MD5E-s2607033--7e59af29b77d3f92d5d376390009143a.nii.gz

SWU_4/sub-0025772/ses-2/mri/neuromorphometrics_sub-0025772_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025772/ses-2/mri/neuromorphometrics_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025772/ses-2/mri/p0sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g1/53/MD5E-s694392--3a034bbd55d6068a1ff46a900bc6b00e.nii.gz/MD5E-s694392--3a034bbd55d6068a1ff46a900bc6b00e.nii.gz

SWU_4/sub-0025772/ses-2/mri/p1sub-0025772_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025772/ses-2/mri/p2sub-0025772_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025772/ses-2/mri/p3sub-0025772_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025772/ses-2/mri/rp1sub-0025772_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025772/ses-2/mri/rp2sub-0025772_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025772/ses-2/mri/rp3sub-0025772_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025772/ses-2/mri/t_sub-0025772_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025772/ses-2/mri/t_sub-0025772_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025772/ses-2/mri/thalamus_sub-0025772_ses-2_run-1_T1w.csv

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SWU_4/sub-0025772/ses-2/mri/thalamus_sub-0025772_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025772/ses-2/mri/wj_sub-0025772_ses-2_run-1_T1w.nii.gz

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