[DATALAD RUNCMD] Compute SWU_4/sub-0025747/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025747/ses-1/anat/sub-0025747_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025747/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025747/ses-1/label/catROI_sub-0025747_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/Jq/MD5E-s61268--d412024ff4757da9e15ba552ad8ea1a2.mat/MD5E-s61268--d412024ff4757da9e15ba552ad8ea1a2.mat

SWU_4/sub-0025747/ses-1/label/catROI_sub-0025747_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/Pp/MD5E-s188555--7652f3387efa047a5ad0032688a4c0ff.xml/MD5E-s188555--7652f3387efa047a5ad0032688a4c0ff.xml

SWU_4/sub-0025747/ses-1/label/catROIs_sub-0025747_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qq/JP/MD5E-s120096--65f8d6be682a49eb511facf9dbc52e1e.mat/MD5E-s120096--65f8d6be682a49eb511facf9dbc52e1e.mat

SWU_4/sub-0025747/ses-1/label/catROIs_sub-0025747_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/Pm/MD5E-s332114--0ccfb242ab8a39b8b85b908b57313f17.xml/MD5E-s332114--0ccfb242ab8a39b8b85b908b57313f17.xml

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/qm/MD5E-s176012--4138398ea1e209ca83da30bbd2bb97fa.nii.gz/MD5E-s176012--4138398ea1e209ca83da30bbd2bb97fa.nii.gz

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/gx/MD5E-s195728--14d7aa6969e6933597e1dbb6870fcafe.nii.gz/MD5E-s195728--14d7aa6969e6933597e1dbb6870fcafe.nii.gz

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/P2/MD5E-s263917--7b1941d53b8349184032bd073db7fdb5.nii.gz/MD5E-s263917--7b1941d53b8349184032bd073db7fdb5.nii.gz

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025747/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0v/vV/MD5E-s292887--51e491b017ade3487171efb883c29908.nii.gz/MD5E-s292887--51e491b017ade3487171efb883c29908.nii.gz

SWU_4/sub-0025747/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025747/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/x9/MD5E-s25204--150529dc617fe6599937105313859ca4.nii.gz/MD5E-s25204--150529dc617fe6599937105313859ca4.nii.gz

SWU_4/sub-0025747/ses-1/mri/aal3_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025747/ses-1/mri/aal3_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/v1/MD5E-s195267--cf66aa41ab7e72ddbba29dc2ebec950d.nii.gz/MD5E-s195267--cf66aa41ab7e72ddbba29dc2ebec950d.nii.gz

SWU_4/sub-0025747/ses-1/mri/anatomy3_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025747/ses-1/mri/anatomy3_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/gp/MD5E-s144314--05b24a2c1322750ee7e2e4d828f9a136.nii.gz/MD5E-s144314--05b24a2c1322750ee7e2e4d828f9a136.nii.gz

SWU_4/sub-0025747/ses-1/mri/anon_misub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/35/MD5E-s9766361--82faacf59a6d3c521de8cf9a7a79e768.nii.gz/MD5E-s9766361--82faacf59a6d3c521de8cf9a7a79e768.nii.gz

SWU_4/sub-0025747/ses-1/mri/anon_msub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g3/Qz/MD5E-s11216844--e728d6720756be597c1a18cf790fcea9.nii.gz/MD5E-s11216844--e728d6720756be597c1a18cf790fcea9.nii.gz

SWU_4/sub-0025747/ses-1/mri/cat_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/Fp/MD5E-s103613--8246f4d00fe98c524c6d47d5a9cf4950.nii.gz/MD5E-s103613--8246f4d00fe98c524c6d47d5a9cf4950.nii.gz

SWU_4/sub-0025747/ses-1/mri/cobra_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025747/ses-1/mri/cobra_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/Vk/MD5E-s49631--95ac7ba121a0ea04e86fb19be5c2df96.nii.gz/MD5E-s49631--95ac7ba121a0ea04e86fb19be5c2df96.nii.gz

SWU_4/sub-0025747/ses-1/mri/hammers_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025747/ses-1/mri/hammers_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/7v/MD5E-s154165--1498458391c275b368849739d4f44791.nii.gz/MD5E-s154165--1498458391c275b368849739d4f44791.nii.gz

SWU_4/sub-0025747/ses-1/mri/ibsr_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025747/ses-1/mri/ibsr_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/m3/MD5E-s162316--7f65ca99fe79add696862c0b875c9059.nii.gz/MD5E-s162316--7f65ca99fe79add696862c0b875c9059.nii.gz

SWU_4/sub-0025747/ses-1/mri/it_sub-0025747_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/fF/MD5E-s283--3f53f6cd7a7f6d7cf059d9ce7db0e068.mat/MD5E-s283--3f53f6cd7a7f6d7cf059d9ce7db0e068.mat

SWU_4/sub-0025747/ses-1/mri/it_sub-0025747_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FG/fp/MD5E-s283--ec1dffd9dc4e531319399505e8b81a59.mat/MD5E-s283--ec1dffd9dc4e531319399505e8b81a59.mat

SWU_4/sub-0025747/ses-1/mri/iy_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/vV/MD5E-s48892001--18624f63577a1830fd7135ebaa6ffe1e.nii.gz/MD5E-s48892001--18624f63577a1830fd7135ebaa6ffe1e.nii.gz

SWU_4/sub-0025747/ses-1/mri/julichbrain_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025747/ses-1/mri/julichbrain_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x2/JF/MD5E-s210952--7e80d8a734b2850e90230849da948a1a.nii.gz/MD5E-s210952--7e80d8a734b2850e90230849da948a1a.nii.gz

SWU_4/sub-0025747/ses-1/mri/lpba40_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025747/ses-1/mri/lpba40_sub-0025747_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Fj/gw/MD5E-s151303--8a253dde0b23f8c1145a7511b4c08af9.nii.gz/MD5E-s151303--8a253dde0b23f8c1145a7511b4c08af9.nii.gz

SWU_4/sub-0025747/ses-1/mri/m0wp1sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xw/P8/MD5E-s2574691--62fd64b51c7c4edef3a7383fb78d5782.nii.gz/MD5E-s2574691--62fd64b51c7c4edef3a7383fb78d5782.nii.gz

SWU_4/sub-0025747/ses-1/mri/m0wp2sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/z6/MD5E-s2292918--6327083115bf647e2e7895914806eb64.nii.gz/MD5E-s2292918--6327083115bf647e2e7895914806eb64.nii.gz

SWU_4/sub-0025747/ses-1/mri/m0wp3sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/m4/MD5E-s2474768--b726e4c022f89d799df7dd3a19743606.nii.gz/MD5E-s2474768--b726e4c022f89d799df7dd3a19743606.nii.gz

SWU_4/sub-0025747/ses-1/mri/mori_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025747/ses-1/mri/mori_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z5/G1/MD5E-s180216--4f745da9abfc35f212e436b736439e3c.nii.gz/MD5E-s180216--4f745da9abfc35f212e436b736439e3c.nii.gz

SWU_4/sub-0025747/ses-1/mri/mwp1sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wQ/93/MD5E-s2576882--b0cdeb89bc57b69ac0ee77f99b4dec3d.nii.gz/MD5E-s2576882--b0cdeb89bc57b69ac0ee77f99b4dec3d.nii.gz

SWU_4/sub-0025747/ses-1/mri/mwp2sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/4v/MD5E-s2287950--e010e3678daa262f8957120fc4740c9a.nii.gz/MD5E-s2287950--e010e3678daa262f8957120fc4740c9a.nii.gz

SWU_4/sub-0025747/ses-1/mri/mwp3sub-0025747_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025747/ses-1/mri/neuromorphometrics_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025747/ses-1/mri/neuromorphometrics_sub-0025747_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025747/ses-1/mri/p0sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/05/MD5E-s666742--2abd71cd394792375098922ecfbd1cf3.nii.gz/MD5E-s666742--2abd71cd394792375098922ecfbd1cf3.nii.gz

SWU_4/sub-0025747/ses-1/mri/p1sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7w/F9/MD5E-s710386--625eeb01391939a7e37a446d02231c30.nii.gz/MD5E-s710386--625eeb01391939a7e37a446d02231c30.nii.gz

SWU_4/sub-0025747/ses-1/mri/p2sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/4m/MD5E-s470752--214d22556af1f2556e37cef9c81d243c.nii.gz/MD5E-s470752--214d22556af1f2556e37cef9c81d243c.nii.gz

SWU_4/sub-0025747/ses-1/mri/p3sub-0025747_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025747/ses-1/mri/rp1sub-0025747_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025747/ses-1/mri/rp2sub-0025747_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025747/ses-1/mri/rp3sub-0025747_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025747/ses-1/mri/t_sub-0025747_ses-1_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025747/ses-1/mri/t_sub-0025747_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025747/ses-1/mri/thalamus_sub-0025747_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025747/ses-1/mri/thalamus_sub-0025747_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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