[DATALAD RUNCMD] Compute BNU_1/sub-0025913/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025913/ses-1/anat/sub-0025913_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025913/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025913/ses-1/label/catROI_sub-0025913_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/68/MD5E-s61259--2351c4a34791b26e44446ad291276315.mat/MD5E-s61259--2351c4a34791b26e44446ad291276315.mat

BNU_1/sub-0025913/ses-1/label/catROI_sub-0025913_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/3x/MD5E-s188833--3da0ca672db64ca31cb4411aa5454191.xml/MD5E-s188833--3da0ca672db64ca31cb4411aa5454191.xml

BNU_1/sub-0025913/ses-1/label/catROIs_sub-0025913_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/Kv/MD5E-s120018--86edcc8a1cf7d983cec69824828a5ef7.mat/MD5E-s120018--86edcc8a1cf7d983cec69824828a5ef7.mat

BNU_1/sub-0025913/ses-1/label/catROIs_sub-0025913_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pK/19/MD5E-s332104--e1fb8a0f78a1ab21bb78462163292c68.xml/MD5E-s332104--e1fb8a0f78a1ab21bb78462163292c68.xml

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/Qk/MD5E-s146859--47fb189f4b78cfbe523b109c2ec5dfc6.nii.gz/MD5E-s146859--47fb189f4b78cfbe523b109c2ec5dfc6.nii.gz

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/25/f8/MD5E-s167024--b55272416b6aa05e21ad23e2f3a3c7ad.nii.gz/MD5E-s167024--b55272416b6aa05e21ad23e2f3a3c7ad.nii.gz

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/Mw/MD5E-s222917--2370e45d51def90f9d87902093f6b992.nii.gz/MD5E-s222917--2370e45d51def90f9d87902093f6b992.nii.gz

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025913/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/PM/MD5E-s248663--cb9fa8daece1bd57ff3fd19582f66b27.nii.gz/MD5E-s248663--cb9fa8daece1bd57ff3fd19582f66b27.nii.gz

BNU_1/sub-0025913/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025913/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/8p/MD5E-s20064--01e2c9881eb59bd7133a59afb2d8d46e.nii.gz/MD5E-s20064--01e2c9881eb59bd7133a59afb2d8d46e.nii.gz

BNU_1/sub-0025913/ses-1/mri/aal3_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025913/ses-1/mri/aal3_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/8k/MD5E-s168549--50c417165fce99c6973a0c77a22a0b17.nii.gz/MD5E-s168549--50c417165fce99c6973a0c77a22a0b17.nii.gz

BNU_1/sub-0025913/ses-1/mri/anatomy3_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025913/ses-1/mri/anatomy3_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/7v/MD5E-s120634--29ca7fc8e7b943a62f743112f4703371.nii.gz/MD5E-s120634--29ca7fc8e7b943a62f743112f4703371.nii.gz

BNU_1/sub-0025913/ses-1/mri/anon_misub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/px/MD5E-s3824436--9913ad0de713dcfcf08007975e6686ef.nii.gz/MD5E-s3824436--9913ad0de713dcfcf08007975e6686ef.nii.gz

BNU_1/sub-0025913/ses-1/mri/anon_msub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/88/MD5E-s10321023--ec08172e3c8306f573c15a7105c33cba.nii.gz/MD5E-s10321023--ec08172e3c8306f573c15a7105c33cba.nii.gz

BNU_1/sub-0025913/ses-1/mri/cat_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/77/2v/MD5E-s91324--eaef3c992f38d5649218a33fee49b3bf.nii.gz/MD5E-s91324--eaef3c992f38d5649218a33fee49b3bf.nii.gz

BNU_1/sub-0025913/ses-1/mri/cobra_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025913/ses-1/mri/cobra_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/mW/MD5E-s41670--d85f9a04e2f42df9fad1717c6ac72d2a.nii.gz/MD5E-s41670--d85f9a04e2f42df9fad1717c6ac72d2a.nii.gz

BNU_1/sub-0025913/ses-1/mri/hammers_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025913/ses-1/mri/hammers_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/vM/MD5E-s133814--1daf328f92c25358d5f0de7ffde9c3fc.nii.gz/MD5E-s133814--1daf328f92c25358d5f0de7ffde9c3fc.nii.gz

BNU_1/sub-0025913/ses-1/mri/ibsr_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025913/ses-1/mri/ibsr_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/XP/MD5E-s141223--bf7082ffc50a0b49c9e415f5b86e3bc5.nii.gz/MD5E-s141223--bf7082ffc50a0b49c9e415f5b86e3bc5.nii.gz

BNU_1/sub-0025913/ses-1/mri/it_sub-0025913_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/1q/MD5E-s285--64de421599911f8af88ef675335a1df4.mat/MD5E-s285--64de421599911f8af88ef675335a1df4.mat

BNU_1/sub-0025913/ses-1/mri/it_sub-0025913_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/Wq/MD5E-s283--c9300ed3001e704964d0f59e9dd23557.mat/MD5E-s283--c9300ed3001e704964d0f59e9dd23557.mat

BNU_1/sub-0025913/ses-1/mri/iy_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/vK/MD5E-s34565097--38d3484ab6ab29ae1920ac49bd4aa0e1.nii.gz/MD5E-s34565097--38d3484ab6ab29ae1920ac49bd4aa0e1.nii.gz

BNU_1/sub-0025913/ses-1/mri/julichbrain_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025913/ses-1/mri/julichbrain_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/9g/MD5E-s179439--90efbcf921894ac9d78299945896b607.nii.gz/MD5E-s179439--90efbcf921894ac9d78299945896b607.nii.gz

BNU_1/sub-0025913/ses-1/mri/lpba40_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025913/ses-1/mri/lpba40_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025913/ses-1/mri/m0wp1sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p0/W6/MD5E-s2581028--8e2bc52755dc5c756129759d6208454e.nii.gz/MD5E-s2581028--8e2bc52755dc5c756129759d6208454e.nii.gz

BNU_1/sub-0025913/ses-1/mri/m0wp2sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/fj/MD5E-s2288175--eace96e47293e8f7cf337c25c82e4f14.nii.gz/MD5E-s2288175--eace96e47293e8f7cf337c25c82e4f14.nii.gz

BNU_1/sub-0025913/ses-1/mri/m0wp3sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zf/PG/MD5E-s2524237--9750c03a67dd5754e051e151c3d4c6a0.nii.gz/MD5E-s2524237--9750c03a67dd5754e051e151c3d4c6a0.nii.gz

BNU_1/sub-0025913/ses-1/mri/mori_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025913/ses-1/mri/mori_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/GQ/MD5E-s153725--f3c9fe2b80d8c1f7b1640527bb7e23d1.nii.gz/MD5E-s153725--f3c9fe2b80d8c1f7b1640527bb7e23d1.nii.gz

BNU_1/sub-0025913/ses-1/mri/mwp1sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FX/9w/MD5E-s2586261--3469d621caaccba8f1cea105c2cef853.nii.gz/MD5E-s2586261--3469d621caaccba8f1cea105c2cef853.nii.gz

BNU_1/sub-0025913/ses-1/mri/mwp2sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/g1/MD5E-s2286630--c18c811e922c76e00082b31cab6e498e.nii.gz/MD5E-s2286630--c18c811e922c76e00082b31cab6e498e.nii.gz

BNU_1/sub-0025913/ses-1/mri/mwp3sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025913/ses-1/mri/neuromorphometrics_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025913/ses-1/mri/neuromorphometrics_sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025913/ses-1/mri/p0sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/jW/MD5E-s773344--784b1d6efd07c2a36eca239cc332d0c7.nii.gz/MD5E-s773344--784b1d6efd07c2a36eca239cc332d0c7.nii.gz

BNU_1/sub-0025913/ses-1/mri/p1sub-0025913_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/X2/MD5E-s779914--1edb5a7019027c74bd08dc1b8020c1f7.nii.gz/MD5E-s779914--1edb5a7019027c74bd08dc1b8020c1f7.nii.gz

BNU_1/sub-0025913/ses-1/mri/p2sub-0025913_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025913/ses-1/mri/p3sub-0025913_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025913/ses-1/mri/rp1sub-0025913_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025913/ses-1/mri/rp2sub-0025913_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025913/ses-1/mri/rp3sub-0025913_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025913/ses-1/mri/t_sub-0025913_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/5K/MD5E-s282--2061687b52e49a83be75a6a621f9142e.mat/MD5E-s282--2061687b52e49a83be75a6a621f9142e.mat

BNU_1/sub-0025913/ses-1/mri/t_sub-0025913_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/x9/MD5E-s283--b05f3d2012549dcc17ff86f0cd5cb007.mat/MD5E-s283--b05f3d2012549dcc17ff86f0cd5cb007.mat

BNU_1/sub-0025913/ses-1/mri/thalamus_sub-0025913_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025913/ses-1/mri/thalamus_sub-0025913_ses-1_run-1_T1w.nii.gz

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