[DATALAD RUNCMD] Compute SWU_1/sub-0027221/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027221/ses-2/anat/sub-0027221_ses-2_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027221/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027221/ses-2/label/catROI_sub-0027221_ses-2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jw/Jz/MD5E-s58667--f5db21d9d87978c10fd12dc786b080f1.mat/MD5E-s58667--f5db21d9d87978c10fd12dc786b080f1.mat

SWU_1/sub-0027221/ses-2/label/catROI_sub-0027221_ses-2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gm/2M/MD5E-s189165--8b204dc3da3d56bc5a1ef5f2394b2fa7.xml/MD5E-s189165--8b204dc3da3d56bc5a1ef5f2394b2fa7.xml

SWU_1/sub-0027221/ses-2/label/catROI_sub-0027221_ses-2_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/xm/MD5E-s61347--049a8c8c69bc22d4268764d2faacc27c.mat/MD5E-s61347--049a8c8c69bc22d4268764d2faacc27c.mat

SWU_1/sub-0027221/ses-2/label/catROI_sub-0027221_ses-2_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/xq/MD5E-s189145--5c79e92d317d02308c44e2150a38d7ab.xml/MD5E-s189145--5c79e92d317d02308c44e2150a38d7ab.xml

SWU_1/sub-0027221/ses-2/label/catROIs_sub-0027221_ses-2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WF/Gk/MD5E-s120105--199dee17b0acc1de1875ba3f76cd1905.mat/MD5E-s120105--199dee17b0acc1de1875ba3f76cd1905.mat

SWU_1/sub-0027221/ses-2/label/catROIs_sub-0027221_ses-2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vx/1K/MD5E-s332175--a18a3ffba272bfb43e699ea02edf9880.xml/MD5E-s332175--a18a3ffba272bfb43e699ea02edf9880.xml

SWU_1/sub-0027221/ses-2/label/catROIs_sub-0027221_ses-2_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/17/MD5E-s120105--437e6b76d032abd5efdb681ca8fe8e3b.mat/MD5E-s120105--437e6b76d032abd5efdb681ca8fe8e3b.mat

SWU_1/sub-0027221/ses-2/label/catROIs_sub-0027221_ses-2_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g7/83/MD5E-s332085--6f51e6e8e983813e9f3269126fe78af2.xml/MD5E-s332085--6f51e6e8e983813e9f3269126fe78af2.xml

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zf/XG/MD5E-s167021--24ee99b1fa705c5d1c4ae0aa1ff58a10.nii.gz/MD5E-s167021--24ee99b1fa705c5d1c4ae0aa1ff58a10.nii.gz

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/mp/MD5E-s167103--37d2882d5ab3215ab537adbbcf8fc05e.nii.gz/MD5E-s167103--37d2882d5ab3215ab537adbbcf8fc05e.nii.gz

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PQ/v7/MD5E-s186707--02d2ea54fd906b8393e87d5a606bed87.nii.gz/MD5E-s186707--02d2ea54fd906b8393e87d5a606bed87.nii.gz

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/2z/MD5E-s186682--11ca14c28d249799fbc2d3a297abcb4f.nii.gz/MD5E-s186682--11ca14c28d249799fbc2d3a297abcb4f.nii.gz

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4v/fP/MD5E-s253268--9ff6fade4e9c60dbff2fa20968c02ecb.nii.gz/MD5E-s253268--9ff6fade4e9c60dbff2fa20968c02ecb.nii.gz

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/57/MD5E-s252366--e13b399a5e57d8df094f7971b346dda4.nii.gz/MD5E-s252366--e13b399a5e57d8df094f7971b346dda4.nii.gz

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fk/Qq/MD5E-s280179--f72e30cde5325c47285af0d66d5717c3.nii.gz/MD5E-s280179--f72e30cde5325c47285af0d66d5717c3.nii.gz

SWU_1/sub-0027221/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M3/fQ/MD5E-s279871--d783ef84be8e58a6d2440b1566b154af.nii.gz/MD5E-s279871--d783ef84be8e58a6d2440b1566b154af.nii.gz

SWU_1/sub-0027221/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/G8/q9/MD5E-s26308--73224a9a963dc9f54fb01fdc11c0ca2f.nii.gz/MD5E-s26308--73224a9a963dc9f54fb01fdc11c0ca2f.nii.gz

SWU_1/sub-0027221/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/75/MD5E-s26430--fd8e284acd3a8e702f110cbe88f10130.nii.gz/MD5E-s26430--fd8e284acd3a8e702f110cbe88f10130.nii.gz

SWU_1/sub-0027221/ses-2/mri/aal3_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K8/85/MD5E-s193295--9754336731c43d6af0f16d217a4920c2.nii.gz/MD5E-s193295--9754336731c43d6af0f16d217a4920c2.nii.gz

SWU_1/sub-0027221/ses-2/mri/aal3_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/48/MD5E-s192535--7c455a2ef66acef06ac5fba078a4b15f.nii.gz/MD5E-s192535--7c455a2ef66acef06ac5fba078a4b15f.nii.gz

SWU_1/sub-0027221/ses-2/mri/anatomy3_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/83/wv/MD5E-s136532--796771ae5576c3cc9f69d12cf3bcd2d6.nii.gz/MD5E-s136532--796771ae5576c3cc9f69d12cf3bcd2d6.nii.gz

SWU_1/sub-0027221/ses-2/mri/anatomy3_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/Vq/MD5E-s136761--fbb67abbdd216dd171d57febd88d78ad.nii.gz/MD5E-s136761--fbb67abbdd216dd171d57febd88d78ad.nii.gz

SWU_1/sub-0027221/ses-2/mri/anon_misub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mx/Wj/MD5E-s9304906--d4eeef2e4e63b27ee4b03dd1be890ef6.nii.gz/MD5E-s9304906--d4eeef2e4e63b27ee4b03dd1be890ef6.nii.gz

SWU_1/sub-0027221/ses-2/mri/anon_misub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/MK/MD5E-s9437973--462df5efc81eae75721302797da0498d.nii.gz/MD5E-s9437973--462df5efc81eae75721302797da0498d.nii.gz

SWU_1/sub-0027221/ses-2/mri/anon_msub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027221/ses-2/mri/anon_msub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9M/3W/MD5E-s10630092--a0acfdfb2ef55a23f262ffc7ad6fc8bb.nii.gz/MD5E-s10630092--a0acfdfb2ef55a23f262ffc7ad6fc8bb.nii.gz

SWU_1/sub-0027221/ses-2/mri/cat_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q0/Mg/MD5E-s102927--602c871f0b77ebf254388662a7005f12.nii.gz/MD5E-s102927--602c871f0b77ebf254388662a7005f12.nii.gz

SWU_1/sub-0027221/ses-2/mri/cat_sub-0027221_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/kp/MD5E-s103390--8e862c027d4e2a26d401a76f146c800c.nii.gz/MD5E-s103390--8e862c027d4e2a26d401a76f146c800c.nii.gz

SWU_1/sub-0027221/ses-2/mri/cobra_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/K9/M2/MD5E-s50307--fb8a00315e84bb55e498a2ff9f41a00f.nii.gz/MD5E-s50307--fb8a00315e84bb55e498a2ff9f41a00f.nii.gz

SWU_1/sub-0027221/ses-2/mri/cobra_sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/hammers_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KG/Gm/MD5E-s150955--0936ae82142542450c9a84c4a339f6d1.nii.gz/MD5E-s150955--0936ae82142542450c9a84c4a339f6d1.nii.gz

SWU_1/sub-0027221/ses-2/mri/hammers_sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/ibsr_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027221/ses-2/mri/ibsr_sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/it_sub-0027221_ses-2_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4g/kj/MD5E-s283--5b14312f3ee8de4752a85d6477c548b1.mat/MD5E-s283--5b14312f3ee8de4752a85d6477c548b1.mat

SWU_1/sub-0027221/ses-2/mri/it_sub-0027221_ses-2_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027221/ses-2/mri/it_sub-0027221_ses-2_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/pW/MD5E-s283--a3df9fdbe5097a78a0c37fd65af1e1b0.mat/MD5E-s283--a3df9fdbe5097a78a0c37fd65af1e1b0.mat

SWU_1/sub-0027221/ses-2/mri/it_sub-0027221_ses-2_run-2_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027221/ses-2/mri/iy_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027221/ses-2/mri/iy_sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/julichbrain_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027221/ses-2/mri/julichbrain_sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/lpba40_sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027221/ses-2/mri/lpba40_sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/m0wp1sub-0027221_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027221/ses-2/mri/m0wp1sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/m0wp2sub-0027221_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/m0wp2sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/m0wp3sub-0027221_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/m0wp3sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/mori_sub-0027221_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/mori_sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/mwp1sub-0027221_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/mwp1sub-0027221_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027221/ses-2/mri/mwp2sub-0027221_ses-2_run-1_T1w.nii.gz

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