[DATALAD RUNCMD] Compute IPCAS_1/sub-0025503/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_1/sub-0025503/ses-2/anat/sub-0025503_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_1/sub-0025503/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_1/sub-0025503/ses-2/label/catROI_sub-0025503_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x8/z0/MD5E-s57534--e92451f5cea5202f6336b94a3b2d78a2.mat/MD5E-s57534--e92451f5cea5202f6336b94a3b2d78a2.mat

IPCAS_1/sub-0025503/ses-2/label/catROI_sub-0025503_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kw/KV/MD5E-s188944--2fe50c55bed246bd9583458bf77ba7b2.xml/MD5E-s188944--2fe50c55bed246bd9583458bf77ba7b2.xml

IPCAS_1/sub-0025503/ses-2/label/catROIs_sub-0025503_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/9F/MD5E-s120061--7082e3dadf06e7e52c0274343e95fdfb.mat/MD5E-s120061--7082e3dadf06e7e52c0274343e95fdfb.mat

IPCAS_1/sub-0025503/ses-2/label/catROIs_sub-0025503_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/8P/MD5E-s332121--545ee7e7a152a674d0c2466cea27d819.xml/MD5E-s332121--545ee7e7a152a674d0c2466cea27d819.xml

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/kp/MD5E-s131194--f06455c4bd8c8e75bb5cd17c8563eea3.nii.gz/MD5E-s131194--f06455c4bd8c8e75bb5cd17c8563eea3.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/z6/MD5E-s148336--6af418dae304eb05cebdedde303f5a08.nii.gz/MD5E-s148336--6af418dae304eb05cebdedde303f5a08.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7q/Kq/MD5E-s196986--1c34b6c302b750656c96f0b6a986e7f0.nii.gz/MD5E-s196986--1c34b6c302b750656c96f0b6a986e7f0.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_1/sub-0025503/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pm/pJ/MD5E-s219559--d1bc46ebe7afd58e686060e36a19490b.nii.gz/MD5E-s219559--d1bc46ebe7afd58e686060e36a19490b.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_1/sub-0025503/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/JV/MD5E-s18461--97699c06f9f2f1e29ab93ffb3c98244f.nii.gz/MD5E-s18461--97699c06f9f2f1e29ab93ffb3c98244f.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/aal3_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_1/sub-0025503/ses-2/mri/aal3_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/QG/MD5E-s149341--6bce9cf899c1194e2ce31c8978d397eb.nii.gz/MD5E-s149341--6bce9cf899c1194e2ce31c8978d397eb.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/anatomy3_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_1/sub-0025503/ses-2/mri/anatomy3_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/3M/MD5E-s104338--88bd7e5250a7a000071d29d5818cd381.nii.gz/MD5E-s104338--88bd7e5250a7a000071d29d5818cd381.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/anon_misub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/p3/MD5E-s3291346--4f51b86f5212dd8ed8e6e40d82210504.nii.gz/MD5E-s3291346--4f51b86f5212dd8ed8e6e40d82210504.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/anon_msub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/8v/MD5E-s7960861--22b84414e865200d92b4ba8db990c037.nii.gz/MD5E-s7960861--22b84414e865200d92b4ba8db990c037.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/cat_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/z5/MD5E-s76396--92044450429aa012334e964ee8e4781c.nii.gz/MD5E-s76396--92044450429aa012334e964ee8e4781c.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/cobra_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_1/sub-0025503/ses-2/mri/cobra_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/7W/MD5E-s37788--6e4fdb97cfd0731ce44c3fa738a73dbd.nii.gz/MD5E-s37788--6e4fdb97cfd0731ce44c3fa738a73dbd.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/hammers_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_1/sub-0025503/ses-2/mri/hammers_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/6X/MD5E-s116849--31c25a22ff6959e84f8e6641c8560f5f.nii.gz/MD5E-s116849--31c25a22ff6959e84f8e6641c8560f5f.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/ibsr_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_1/sub-0025503/ses-2/mri/ibsr_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/w9/MD5E-s121201--05c2e9a69f73831fba070ce976a0f58a.nii.gz/MD5E-s121201--05c2e9a69f73831fba070ce976a0f58a.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/it_sub-0025503_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/v3/MD5E-s284--eee2d556ab2fd8f94d8bdfb5e2eda8df.mat/MD5E-s284--eee2d556ab2fd8f94d8bdfb5e2eda8df.mat

IPCAS_1/sub-0025503/ses-2/mri/it_sub-0025503_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/3q/MD5E-s284--885d39d84da092d6603b13c9c2813758.mat/MD5E-s284--885d39d84da092d6603b13c9c2813758.mat

IPCAS_1/sub-0025503/ses-2/mri/iy_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/vG/MD5E-s30303586--520ae9bd83502072f01f381b31c34913.nii.gz/MD5E-s30303586--520ae9bd83502072f01f381b31c34913.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/julichbrain_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025503/ses-2/mri/julichbrain_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/Zv/MD5E-s156328--77aa1bbabe63ff64a0d1b1371744993f.nii.gz/MD5E-s156328--77aa1bbabe63ff64a0d1b1371744993f.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/lpba40_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025503/ses-2/mri/lpba40_sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/m0wp1sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/m0wp2sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/2m/MD5E-s2266024--ca453e1d67edccdf0600f84fcc961713.nii.gz/MD5E-s2266024--ca453e1d67edccdf0600f84fcc961713.nii.gz

IPCAS_1/sub-0025503/ses-2/mri/m0wp3sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025503/ses-2/mri/mori_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025503/ses-2/mri/mori_sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/mwp1sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025503/ses-2/mri/mwp2sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/mwp3sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/neuromorphometrics_sub-0025503_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025503/ses-2/mri/neuromorphometrics_sub-0025503_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025503/ses-2/mri/p0sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/p1sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/p2sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/p3sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/rp1sub-0025503_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/rp2sub-0025503_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/rp3sub-0025503_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/t_sub-0025503_ses-2_run-1_T1w_affine_reorient.mat

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IPCAS_1/sub-0025503/ses-2/mri/t_sub-0025503_ses-2_run-1_T1w_rigid_reorient.mat

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IPCAS_1/sub-0025503/ses-2/mri/thalamus_sub-0025503_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025503/ses-2/mri/thalamus_sub-0025503_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025503/ses-2/mri/wj_sub-0025503_ses-2_run-1_T1w.nii.gz

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