[DATALAD RUNCMD] Compute UWM/sub-0027272/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/UWM/sub-0027272/ses-2/anat/sub-0027272_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "UWM/sub-0027272/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

UWM/sub-0027272/ses-2/label/catROI_sub-0027272_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/P4/MD5E-s58246--c8365050082081fab8b78b9cab937cdb.mat/MD5E-s58246--c8365050082081fab8b78b9cab937cdb.mat

UWM/sub-0027272/ses-2/label/catROI_sub-0027272_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/v8/MD5E-s188583--8c5d4b5353319f295b7133eff31230c9.xml/MD5E-s188583--8c5d4b5353319f295b7133eff31230c9.xml

UWM/sub-0027272/ses-2/label/catROIs_sub-0027272_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Z/4k/MD5E-s119974--e03bdcda4e0c03da5671bff78e1d790b.mat/MD5E-s119974--e03bdcda4e0c03da5671bff78e1d790b.mat

UWM/sub-0027272/ses-2/label/catROIs_sub-0027272_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/p0/MD5E-s332098--182b264ec200378205282d1915c62019.xml/MD5E-s332098--182b264ec200378205282d1915c62019.xml

UWM/sub-0027272/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

UWM/sub-0027272/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/Zz/MD5E-s204367--ebeaf3da38887d4101a1eebf5205bb33.nii.gz/MD5E-s204367--ebeaf3da38887d4101a1eebf5205bb33.nii.gz

UWM/sub-0027272/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

UWM/sub-0027272/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/Xx/MD5E-s230092--bf2f9a68bf30f5c31326f4a4467187c9.nii.gz/MD5E-s230092--bf2f9a68bf30f5c31326f4a4467187c9.nii.gz

UWM/sub-0027272/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

UWM/sub-0027272/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/FV/MD5E-s288934--bb963589bf248e135ff8b52a6f3e84f9.nii.gz/MD5E-s288934--bb963589bf248e135ff8b52a6f3e84f9.nii.gz

UWM/sub-0027272/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

UWM/sub-0027272/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f2/PZ/MD5E-s321421--a8f23e91012fb14034f014fbbf38c164.nii.gz/MD5E-s321421--a8f23e91012fb14034f014fbbf38c164.nii.gz

UWM/sub-0027272/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

UWM/sub-0027272/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/Fj/MD5E-s25412--fe03bd89414d9297b794a95632bc2af2.nii.gz/MD5E-s25412--fe03bd89414d9297b794a95632bc2af2.nii.gz

UWM/sub-0027272/ses-2/mri/aal3_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/aal3_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9G/PF/MD5E-s228998--f4439bf58c354e0775d95e9999b4b5a8.nii.gz/MD5E-s228998--f4439bf58c354e0775d95e9999b4b5a8.nii.gz

UWM/sub-0027272/ses-2/mri/anatomy3_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

UWM/sub-0027272/ses-2/mri/anatomy3_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/jq/MD5E-s163312--53ebd25de5b0671f5d3e7e961516f60d.nii.gz/MD5E-s163312--53ebd25de5b0671f5d3e7e961516f60d.nii.gz

UWM/sub-0027272/ses-2/mri/anon_misub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/JV/MD5E-s5099600--857a5aae90fc5c027da6277a5dbd2b86.nii.gz/MD5E-s5099600--857a5aae90fc5c027da6277a5dbd2b86.nii.gz

UWM/sub-0027272/ses-2/mri/anon_msub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/W7/MD5E-s10984533--e39970064bdeb2acd80c4e9ec5c8a8e5.nii.gz/MD5E-s10984533--e39970064bdeb2acd80c4e9ec5c8a8e5.nii.gz

UWM/sub-0027272/ses-2/mri/cat_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/6F/MD5E-s118833--2da9ea75536be4e4e68ad6801c757886.nii.gz/MD5E-s118833--2da9ea75536be4e4e68ad6801c757886.nii.gz

UWM/sub-0027272/ses-2/mri/cobra_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

UWM/sub-0027272/ses-2/mri/cobra_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3j/X4/MD5E-s54641--17fbd56f0304c6a8c6948d39c89f5922.nii.gz/MD5E-s54641--17fbd56f0304c6a8c6948d39c89f5922.nii.gz

UWM/sub-0027272/ses-2/mri/hammers_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

UWM/sub-0027272/ses-2/mri/hammers_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/ibsr_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

UWM/sub-0027272/ses-2/mri/ibsr_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/it_sub-0027272_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/MJ/MD5E-s283--84441341d94efd56e836ad7c27a11c87.mat/MD5E-s283--84441341d94efd56e836ad7c27a11c87.mat

UWM/sub-0027272/ses-2/mri/it_sub-0027272_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/G2/MD5E-s283--85474eaaf4c2953f442ccb15f5c989fa.mat/MD5E-s283--85474eaaf4c2953f442ccb15f5c989fa.mat

UWM/sub-0027272/ses-2/mri/iy_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/julichbrain_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/julichbrain_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/lpba40_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/lpba40_sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/m0wp1sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/m0wp2sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/m0wp3sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/mori_sub-0027272_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/mori_sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/mwp1sub-0027272_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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UWM/sub-0027272/ses-2/mri/mwp2sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/mwp3sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/neuromorphometrics_sub-0027272_ses-2_run-1_T1w.csv

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UWM/sub-0027272/ses-2/mri/neuromorphometrics_sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/p0sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/p1sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/p2sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/p3sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/rp1sub-0027272_ses-2_run-1_T1w_affine.nii.gz

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UWM/sub-0027272/ses-2/mri/rp2sub-0027272_ses-2_run-1_T1w_affine.nii.gz

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UWM/sub-0027272/ses-2/mri/rp3sub-0027272_ses-2_run-1_T1w_affine.nii.gz

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UWM/sub-0027272/ses-2/mri/t_sub-0027272_ses-2_run-1_T1w_affine_reorient.mat

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UWM/sub-0027272/ses-2/mri/t_sub-0027272_ses-2_run-1_T1w_rigid_reorient.mat

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UWM/sub-0027272/ses-2/mri/thalamus_sub-0027272_ses-2_run-1_T1w.csv

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UWM/sub-0027272/ses-2/mri/thalamus_sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/wj_sub-0027272_ses-2_run-1_T1w.nii.gz

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UWM/sub-0027272/ses-2/mri/wmisub-0027272_ses-2_run-1_T1w.nii.gz

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