[DATALAD RUNCMD] Compute SWU_4/sub-0025848/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025848/ses-2/anat/sub-0025848_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025848/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025848/ses-2/label/catROI_sub-0025848_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/08/MD5E-s61214--9742cedc8844008b3b270c3a2c8cfa34.mat/MD5E-s61214--9742cedc8844008b3b270c3a2c8cfa34.mat

SWU_4/sub-0025848/ses-2/label/catROI_sub-0025848_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/2p/MD5E-s189103--e961c2eb11e62f82f9855aa9b37df7b7.xml/MD5E-s189103--e961c2eb11e62f82f9855aa9b37df7b7.xml

SWU_4/sub-0025848/ses-2/label/catROIs_sub-0025848_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/x0/MD5E-s120149--9a4161d9a8ca77b6f6470cae764d9321.mat/MD5E-s120149--9a4161d9a8ca77b6f6470cae764d9321.mat

SWU_4/sub-0025848/ses-2/label/catROIs_sub-0025848_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/0V/MD5E-s332178--7ba2fd1434e7c0225a217dd9de76b66f.xml/MD5E-s332178--7ba2fd1434e7c0225a217dd9de76b66f.xml

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Z/GP/MD5E-s150125--170a13b7e2c717be6de8f3a9ab8a53d7.nii.gz/MD5E-s150125--170a13b7e2c717be6de8f3a9ab8a53d7.nii.gz

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/Mk/MD5E-s169432--b81f8c7dccebd0fe85f95b011cdbc8c7.nii.gz/MD5E-s169432--b81f8c7dccebd0fe85f95b011cdbc8c7.nii.gz

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/8J/MD5E-s227254--c251894ffe907f91818f9fca7bf15d7b.nii.gz/MD5E-s227254--c251894ffe907f91818f9fca7bf15d7b.nii.gz

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025848/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/v8/MD5E-s253344--a82620a33e650a8ccdbbbd3e2d0461cb.nii.gz/MD5E-s253344--a82620a33e650a8ccdbbbd3e2d0461cb.nii.gz

SWU_4/sub-0025848/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025848/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/8x/MD5E-s23397--5d8561e4a202900daaadad09bc6aaec7.nii.gz/MD5E-s23397--5d8561e4a202900daaadad09bc6aaec7.nii.gz

SWU_4/sub-0025848/ses-2/mri/aal3_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025848/ses-2/mri/aal3_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/FZ/MD5E-s173426--fe9b27909545dc760963d37bb78f579b.nii.gz/MD5E-s173426--fe9b27909545dc760963d37bb78f579b.nii.gz

SWU_4/sub-0025848/ses-2/mri/anatomy3_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025848/ses-2/mri/anatomy3_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/8v/MD5E-s124595--1df66d726fb29d7915245c5d1f946024.nii.gz/MD5E-s124595--1df66d726fb29d7915245c5d1f946024.nii.gz

SWU_4/sub-0025848/ses-2/mri/anon_misub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/MG/MD5E-s8597319--0294ac920a412fe47617893ffbe140c0.nii.gz/MD5E-s8597319--0294ac920a412fe47617893ffbe140c0.nii.gz

SWU_4/sub-0025848/ses-2/mri/anon_msub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2p/91/MD5E-s9857431--bdde46a8f1d0ad2f62a6c7182fdb27f2.nii.gz/MD5E-s9857431--bdde46a8f1d0ad2f62a6c7182fdb27f2.nii.gz

SWU_4/sub-0025848/ses-2/mri/cat_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/4m/MD5E-s93915--0ab2d3263ccc0ec4320bb9664a2ce0a7.nii.gz/MD5E-s93915--0ab2d3263ccc0ec4320bb9664a2ce0a7.nii.gz

SWU_4/sub-0025848/ses-2/mri/cobra_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025848/ses-2/mri/cobra_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/FW/MD5E-s45922--90c0c5285a9749c23b345d7a0863626b.nii.gz/MD5E-s45922--90c0c5285a9749c23b345d7a0863626b.nii.gz

SWU_4/sub-0025848/ses-2/mri/hammers_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025848/ses-2/mri/hammers_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/6q/MD5E-s135459--52191e46510df48d87609bc98afaa991.nii.gz/MD5E-s135459--52191e46510df48d87609bc98afaa991.nii.gz

SWU_4/sub-0025848/ses-2/mri/ibsr_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025848/ses-2/mri/ibsr_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0w/5V/MD5E-s143088--15a1de25a343f8bd24e56d834ae0e97c.nii.gz/MD5E-s143088--15a1de25a343f8bd24e56d834ae0e97c.nii.gz

SWU_4/sub-0025848/ses-2/mri/it_sub-0025848_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/gg/MD5E-s282--b8f414b4ff09e3a8cebf63f7131ae719.mat/MD5E-s282--b8f414b4ff09e3a8cebf63f7131ae719.mat

SWU_4/sub-0025848/ses-2/mri/it_sub-0025848_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/xx/MD5E-s283--2e4fd3f6071825163ef9bcebaa725099.mat/MD5E-s283--2e4fd3f6071825163ef9bcebaa725099.mat

SWU_4/sub-0025848/ses-2/mri/iy_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/7m/MD5E-s41614894--ff443c8621ca701aadd7ec977aa4f4e6.nii.gz/MD5E-s41614894--ff443c8621ca701aadd7ec977aa4f4e6.nii.gz

SWU_4/sub-0025848/ses-2/mri/julichbrain_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025848/ses-2/mri/julichbrain_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/w2/MD5E-s179938--5cf250462fba7ba1bd67a850eb9bae8f.nii.gz/MD5E-s179938--5cf250462fba7ba1bd67a850eb9bae8f.nii.gz

SWU_4/sub-0025848/ses-2/mri/lpba40_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025848/ses-2/mri/lpba40_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/4M/MD5E-s132720--421acc4707d67b268d756fd73b308451.nii.gz/MD5E-s132720--421acc4707d67b268d756fd73b308451.nii.gz

SWU_4/sub-0025848/ses-2/mri/m0wp1sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/x3/MD5E-s2570767--bafd729f05e4006104bfef165f932efe.nii.gz/MD5E-s2570767--bafd729f05e4006104bfef165f932efe.nii.gz

SWU_4/sub-0025848/ses-2/mri/m0wp2sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/Kj/MD5E-s2323364--13a0abe341d3d2eb3517e2924cfcb44f.nii.gz/MD5E-s2323364--13a0abe341d3d2eb3517e2924cfcb44f.nii.gz

SWU_4/sub-0025848/ses-2/mri/m0wp3sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P9/xx/MD5E-s2550184--111a5774bd3dbf2d796cf324ae2570e5.nii.gz/MD5E-s2550184--111a5774bd3dbf2d796cf324ae2570e5.nii.gz

SWU_4/sub-0025848/ses-2/mri/mori_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025848/ses-2/mri/mori_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/71/QP/MD5E-s158400--5b18d1fbef675686fc408d032ac22457.nii.gz/MD5E-s158400--5b18d1fbef675686fc408d032ac22457.nii.gz

SWU_4/sub-0025848/ses-2/mri/mwp1sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/Qz/MD5E-s2581972--0250bc97e1248bfbc497bf00eb7321b1.nii.gz/MD5E-s2581972--0250bc97e1248bfbc497bf00eb7321b1.nii.gz

SWU_4/sub-0025848/ses-2/mri/mwp2sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/W7/MD5E-s2329486--6b94825f5099951ac8ce5e73723dd399.nii.gz/MD5E-s2329486--6b94825f5099951ac8ce5e73723dd399.nii.gz

SWU_4/sub-0025848/ses-2/mri/mwp3sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025848/ses-2/mri/neuromorphometrics_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025848/ses-2/mri/neuromorphometrics_sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025848/ses-2/mri/p0sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/mq/MD5E-s577780--711c89c266b7891fc6852261dbd986d5.nii.gz/MD5E-s577780--711c89c266b7891fc6852261dbd986d5.nii.gz

SWU_4/sub-0025848/ses-2/mri/p1sub-0025848_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Kw/kv/MD5E-s609645--b9222629bd4f5851e9e5be44486705a3.nii.gz/MD5E-s609645--b9222629bd4f5851e9e5be44486705a3.nii.gz

SWU_4/sub-0025848/ses-2/mri/p2sub-0025848_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/X1/MD5E-s399975--c538f849d50ec4d3b5913f279950cb28.nii.gz/MD5E-s399975--c538f849d50ec4d3b5913f279950cb28.nii.gz

SWU_4/sub-0025848/ses-2/mri/p3sub-0025848_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025848/ses-2/mri/rp1sub-0025848_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025848/ses-2/mri/rp2sub-0025848_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025848/ses-2/mri/rp3sub-0025848_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025848/ses-2/mri/t_sub-0025848_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/9Q/MD5E-s284--c8f1900c8ff3866dd3b6a81c7abc31eb.mat/MD5E-s284--c8f1900c8ff3866dd3b6a81c7abc31eb.mat

SWU_4/sub-0025848/ses-2/mri/t_sub-0025848_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/ZG/MD5E-s284--8dc49b8f27f789361259ad5b7ed53792.mat/MD5E-s284--8dc49b8f27f789361259ad5b7ed53792.mat

SWU_4/sub-0025848/ses-2/mri/thalamus_sub-0025848_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025848/ses-2/mri/thalamus_sub-0025848_ses-2_run-1_T1w.nii.gz

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