[DATALAD RUNCMD] Compute BNU_1/sub-0025911/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025911/ses-1/anat/sub-0025911_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025911/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025911/ses-1/label/catROI_sub-0025911_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/4z/MD5E-s57810--0870a0f745c64ca30261d874b61368aa.mat/MD5E-s57810--0870a0f745c64ca30261d874b61368aa.mat

BNU_1/sub-0025911/ses-1/label/catROI_sub-0025911_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/vK/MD5E-s188764--8448dd5cac64eef56757dacb3b5dc035.xml/MD5E-s188764--8448dd5cac64eef56757dacb3b5dc035.xml

BNU_1/sub-0025911/ses-1/label/catROIs_sub-0025911_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/xQ/MD5E-s119993--d4532e4786a737db999429df1901394e.mat/MD5E-s119993--d4532e4786a737db999429df1901394e.mat

BNU_1/sub-0025911/ses-1/label/catROIs_sub-0025911_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/vf/MD5E-s332119--37d43b1ad47952756399370aa131c175.xml/MD5E-s332119--37d43b1ad47952756399370aa131c175.xml

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/FM/MD5E-s138541--6b229038b7f690f594c0c66b2f4731c1.nii.gz/MD5E-s138541--6b229038b7f690f594c0c66b2f4731c1.nii.gz

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/7V/MD5E-s157231--504f9a567a6efb97aa439a4bd4a8443a.nii.gz/MD5E-s157231--504f9a567a6efb97aa439a4bd4a8443a.nii.gz

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/ZZ/MD5E-s212398--21db9ba46b0ac75fed9c904fb5b0b840.nii.gz/MD5E-s212398--21db9ba46b0ac75fed9c904fb5b0b840.nii.gz

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025911/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/Wz/MD5E-s236043--8cc59907a4b5dfe7caa352fa106e8106.nii.gz/MD5E-s236043--8cc59907a4b5dfe7caa352fa106e8106.nii.gz

BNU_1/sub-0025911/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025911/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/gj/MD5E-s19436--e005da6ab93777a318a9f53497de02a1.nii.gz/MD5E-s19436--e005da6ab93777a318a9f53497de02a1.nii.gz

BNU_1/sub-0025911/ses-1/mri/aal3_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025911/ses-1/mri/aal3_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/KK/MD5E-s157588--19940223c545788b11a5ebcbe59eab0c.nii.gz/MD5E-s157588--19940223c545788b11a5ebcbe59eab0c.nii.gz

BNU_1/sub-0025911/ses-1/mri/anatomy3_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025911/ses-1/mri/anatomy3_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/jg/MD5E-s113285--3729101688ec61516892d3bfaf358b38.nii.gz/MD5E-s113285--3729101688ec61516892d3bfaf358b38.nii.gz

BNU_1/sub-0025911/ses-1/mri/anon_misub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3F/Q6/MD5E-s3748965--974a909d73273eb4cc7e48d2f8a0b38d.nii.gz/MD5E-s3748965--974a909d73273eb4cc7e48d2f8a0b38d.nii.gz

BNU_1/sub-0025911/ses-1/mri/anon_msub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/XJ/MD5E-s10056662--a42ba08f090e822044d1f6b832493cdf.nii.gz/MD5E-s10056662--a42ba08f090e822044d1f6b832493cdf.nii.gz

BNU_1/sub-0025911/ses-1/mri/cat_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/xZ/MD5E-s84342--c8cd3a3d99496bccd31ef2456f8bdaf7.nii.gz/MD5E-s84342--c8cd3a3d99496bccd31ef2456f8bdaf7.nii.gz

BNU_1/sub-0025911/ses-1/mri/cobra_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025911/ses-1/mri/cobra_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/4J/MD5E-s40507--00a4661f45cc09b13abfd7a8ad6502c1.nii.gz/MD5E-s40507--00a4661f45cc09b13abfd7a8ad6502c1.nii.gz

BNU_1/sub-0025911/ses-1/mri/hammers_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025911/ses-1/mri/hammers_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/4K/MD5E-s127198--e8e2ed70b3bd45b962a12e024ea52959.nii.gz/MD5E-s127198--e8e2ed70b3bd45b962a12e024ea52959.nii.gz

BNU_1/sub-0025911/ses-1/mri/ibsr_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025911/ses-1/mri/ibsr_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jv/V3/MD5E-s131331--b30c2375dce2a7d25e70a479571c8d25.nii.gz/MD5E-s131331--b30c2375dce2a7d25e70a479571c8d25.nii.gz

BNU_1/sub-0025911/ses-1/mri/it_sub-0025911_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/75/MD5E-s283--f5853cb133f3071566fa3be710db3f4f.mat/MD5E-s283--f5853cb133f3071566fa3be710db3f4f.mat

BNU_1/sub-0025911/ses-1/mri/it_sub-0025911_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j8/0v/MD5E-s283--674cc1c514bfc899bde3d87030f604a3.mat/MD5E-s283--674cc1c514bfc899bde3d87030f604a3.mat

BNU_1/sub-0025911/ses-1/mri/iy_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/p2/MD5E-s32469012--4660e465c2b870a70f59655d0a662746.nii.gz/MD5E-s32469012--4660e465c2b870a70f59655d0a662746.nii.gz

BNU_1/sub-0025911/ses-1/mri/julichbrain_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025911/ses-1/mri/julichbrain_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/Vk/MD5E-s168526--f800538a593b62669dfe8b459d7f6dd5.nii.gz/MD5E-s168526--f800538a593b62669dfe8b459d7f6dd5.nii.gz

BNU_1/sub-0025911/ses-1/mri/lpba40_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025911/ses-1/mri/lpba40_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/JZ/MD5E-s124464--5e1724266674095ae578d693a925b3d7.nii.gz/MD5E-s124464--5e1724266674095ae578d693a925b3d7.nii.gz

BNU_1/sub-0025911/ses-1/mri/m0wp1sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/7Q/MD5E-s2591828--cc6444778d1e246ab3c725616f492dcf.nii.gz/MD5E-s2591828--cc6444778d1e246ab3c725616f492dcf.nii.gz

BNU_1/sub-0025911/ses-1/mri/m0wp2sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/xx/MD5E-s2281587--33a83af7c15a483fa98482da9723aa81.nii.gz/MD5E-s2281587--33a83af7c15a483fa98482da9723aa81.nii.gz

BNU_1/sub-0025911/ses-1/mri/m0wp3sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/w3/MD5E-s2476328--cfc1277f7eb367c588af91b94e7aa4fa.nii.gz/MD5E-s2476328--cfc1277f7eb367c588af91b94e7aa4fa.nii.gz

BNU_1/sub-0025911/ses-1/mri/mori_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025911/ses-1/mri/mori_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G1/pg/MD5E-s143733--3f4be88be4a7cea426bde82034ecd75e.nii.gz/MD5E-s143733--3f4be88be4a7cea426bde82034ecd75e.nii.gz

BNU_1/sub-0025911/ses-1/mri/mwp1sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1V/GP/MD5E-s2597033--942cc2c40f427619bd3cf0d01c10312d.nii.gz/MD5E-s2597033--942cc2c40f427619bd3cf0d01c10312d.nii.gz

BNU_1/sub-0025911/ses-1/mri/mwp2sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/1W/MD5E-s2285041--dc716a2bb05570cc467b5fa2f0aceacd.nii.gz/MD5E-s2285041--dc716a2bb05570cc467b5fa2f0aceacd.nii.gz

BNU_1/sub-0025911/ses-1/mri/mwp3sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025911/ses-1/mri/neuromorphometrics_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025911/ses-1/mri/neuromorphometrics_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025911/ses-1/mri/p0sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/F5/MD5E-s716098--8554408da9cc969d3d230362b2f66933.nii.gz/MD5E-s716098--8554408da9cc969d3d230362b2f66933.nii.gz

BNU_1/sub-0025911/ses-1/mri/p1sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025911/ses-1/mri/p2sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5f/2Z/MD5E-s485067--02d750ee72ec86384f73842aaa208e9a.nii.gz/MD5E-s485067--02d750ee72ec86384f73842aaa208e9a.nii.gz

BNU_1/sub-0025911/ses-1/mri/p3sub-0025911_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025911/ses-1/mri/rp1sub-0025911_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025911/ses-1/mri/rp2sub-0025911_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025911/ses-1/mri/rp3sub-0025911_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025911/ses-1/mri/t_sub-0025911_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025911/ses-1/mri/t_sub-0025911_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025911/ses-1/mri/thalamus_sub-0025911_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025911/ses-1/mri/thalamus_sub-0025911_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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