[DATALAD RUNCMD] Compute SWU_4/sub-0025814/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025814/ses-1/anat/sub-0025814_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025814/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025814/ses-1/label/catROI_sub-0025814_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P7/0V/MD5E-s61168--44fc5f7bf5d9613eb024096e9516e767.mat/MD5E-s61168--44fc5f7bf5d9613eb024096e9516e767.mat

SWU_4/sub-0025814/ses-1/label/catROI_sub-0025814_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gp/vm/MD5E-s188652--e8fd31195845ce6291ab544b2196b179.xml/MD5E-s188652--e8fd31195845ce6291ab544b2196b179.xml

SWU_4/sub-0025814/ses-1/label/catROIs_sub-0025814_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f3/q1/MD5E-s120029--69900661103aaf3aeeb1a747623746d8.mat/MD5E-s120029--69900661103aaf3aeeb1a747623746d8.mat

SWU_4/sub-0025814/ses-1/label/catROIs_sub-0025814_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/p9/MD5E-s332167--39acc8c9b359c141f9fa8c759fb205bd.xml/MD5E-s332167--39acc8c9b359c141f9fa8c759fb205bd.xml

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/WX/MD5E-s168647--65c6030e66906bc79c0f82c95f17c78d.nii.gz/MD5E-s168647--65c6030e66906bc79c0f82c95f17c78d.nii.gz

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J1/Kj/MD5E-s187942--fd17d09c04372d423f7e005955541b7f.nii.gz/MD5E-s187942--fd17d09c04372d423f7e005955541b7f.nii.gz

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/Qg/MD5E-s254166--402848787dde96ccc21424b499409c27.nii.gz/MD5E-s254166--402848787dde96ccc21424b499409c27.nii.gz

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025814/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/38/MD5E-s281948--788a877bf7c2d2f5405ccc2e71f4d824.nii.gz/MD5E-s281948--788a877bf7c2d2f5405ccc2e71f4d824.nii.gz

SWU_4/sub-0025814/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025814/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/JQ/MD5E-s24318--89c512510b522d7406f21aeee60da966.nii.gz/MD5E-s24318--89c512510b522d7406f21aeee60da966.nii.gz

SWU_4/sub-0025814/ses-1/mri/aal3_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025814/ses-1/mri/aal3_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/f0/MD5E-s189540--2407f13b86dc3d1213ddf6aea88572ba.nii.gz/MD5E-s189540--2407f13b86dc3d1213ddf6aea88572ba.nii.gz

SWU_4/sub-0025814/ses-1/mri/anatomy3_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025814/ses-1/mri/anatomy3_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/pX/MD5E-s140041--75aa2fa8c0e2f1db792ae1db4bbafe2c.nii.gz/MD5E-s140041--75aa2fa8c0e2f1db792ae1db4bbafe2c.nii.gz

SWU_4/sub-0025814/ses-1/mri/anon_misub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/57/Jv/MD5E-s8313157--16c9f040a84d3468a8ff8878a2892ba8.nii.gz/MD5E-s8313157--16c9f040a84d3468a8ff8878a2892ba8.nii.gz

SWU_4/sub-0025814/ses-1/mri/anon_msub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/fG/MD5E-s7965365--0d0d45f7a143fa309b6b6a57e7d90da1.nii.gz/MD5E-s7965365--0d0d45f7a143fa309b6b6a57e7d90da1.nii.gz

SWU_4/sub-0025814/ses-1/mri/cat_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/1G/MD5E-s100129--7762f224f1ace899e4141a025d0bd19c.nii.gz/MD5E-s100129--7762f224f1ace899e4141a025d0bd19c.nii.gz

SWU_4/sub-0025814/ses-1/mri/cobra_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025814/ses-1/mri/cobra_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/1g/MD5E-s49674--e692f572cea8d7fb31c866a993b4f818.nii.gz/MD5E-s49674--e692f572cea8d7fb31c866a993b4f818.nii.gz

SWU_4/sub-0025814/ses-1/mri/hammers_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025814/ses-1/mri/hammers_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/Km/MD5E-s149041--9e0144afbe7c0b8fee4664a9d6ef9055.nii.gz/MD5E-s149041--9e0144afbe7c0b8fee4664a9d6ef9055.nii.gz

SWU_4/sub-0025814/ses-1/mri/ibsr_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025814/ses-1/mri/ibsr_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/5K/MD5E-s157683--a07f946b968d5baeb9e2328efdf0caf0.nii.gz/MD5E-s157683--a07f946b968d5baeb9e2328efdf0caf0.nii.gz

SWU_4/sub-0025814/ses-1/mri/it_sub-0025814_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/4Q/MD5E-s284--df153ef2b7b075643193505c7d8f8561.mat/MD5E-s284--df153ef2b7b075643193505c7d8f8561.mat

SWU_4/sub-0025814/ses-1/mri/it_sub-0025814_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/04/j8/MD5E-s283--64ac506492195e101606ad788a48fefb.mat/MD5E-s283--64ac506492195e101606ad788a48fefb.mat

SWU_4/sub-0025814/ses-1/mri/iy_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X1/V7/MD5E-s45925120--99b599d57f8e33e9b2fec65ed7ddf3a5.nii.gz/MD5E-s45925120--99b599d57f8e33e9b2fec65ed7ddf3a5.nii.gz

SWU_4/sub-0025814/ses-1/mri/julichbrain_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025814/ses-1/mri/julichbrain_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QK/P5/MD5E-s202661--b67117eb45199fc71fe516bb4c0297ba.nii.gz/MD5E-s202661--b67117eb45199fc71fe516bb4c0297ba.nii.gz

SWU_4/sub-0025814/ses-1/mri/lpba40_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025814/ses-1/mri/lpba40_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pk/M0/MD5E-s145865--49bdd30d563165e7412527739018f1a9.nii.gz/MD5E-s145865--49bdd30d563165e7412527739018f1a9.nii.gz

SWU_4/sub-0025814/ses-1/mri/m0wp1sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/5z/MD5E-s2585085--a4cfd63c759cea520d3152722b44d1d3.nii.gz/MD5E-s2585085--a4cfd63c759cea520d3152722b44d1d3.nii.gz

SWU_4/sub-0025814/ses-1/mri/m0wp2sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4W/fG/MD5E-s2318224--95c8cc86206b6dcd9ee2d8f7d5dcc586.nii.gz/MD5E-s2318224--95c8cc86206b6dcd9ee2d8f7d5dcc586.nii.gz

SWU_4/sub-0025814/ses-1/mri/m0wp3sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0V/M6/MD5E-s2493358--fc2aabf24439654aec58c6358e78241e.nii.gz/MD5E-s2493358--fc2aabf24439654aec58c6358e78241e.nii.gz

SWU_4/sub-0025814/ses-1/mri/mori_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025814/ses-1/mri/mori_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/Mg/MD5E-s173927--e57866aa626b976a84d09fe574b52403.nii.gz/MD5E-s173927--e57866aa626b976a84d09fe574b52403.nii.gz

SWU_4/sub-0025814/ses-1/mri/mwp1sub-0025814_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/M4/4Q/MD5E-s2590359--eda5f97fbb99a572448437ae4c6d4596.nii.gz/MD5E-s2590359--eda5f97fbb99a572448437ae4c6d4596.nii.gz

SWU_4/sub-0025814/ses-1/mri/mwp2sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/4Q/MD5E-s2322709--526e031aca4ceccef06f3296ca47f91a.nii.gz/MD5E-s2322709--526e031aca4ceccef06f3296ca47f91a.nii.gz

SWU_4/sub-0025814/ses-1/mri/mwp3sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025814/ses-1/mri/neuromorphometrics_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025814/ses-1/mri/neuromorphometrics_sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8z/Gx/MD5E-s203178--4d3b39c9062e6c027ae95a3f79afa0c8.nii.gz/MD5E-s203178--4d3b39c9062e6c027ae95a3f79afa0c8.nii.gz

SWU_4/sub-0025814/ses-1/mri/p0sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J3/Fz/MD5E-s651438--2c31e4723e135ccf3a1e4123920f4634.nii.gz/MD5E-s651438--2c31e4723e135ccf3a1e4123920f4634.nii.gz

SWU_4/sub-0025814/ses-1/mri/p1sub-0025814_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/J1/Xw/MD5E-s696076--c462af83c81e89649600a9aff857bcd0.nii.gz/MD5E-s696076--c462af83c81e89649600a9aff857bcd0.nii.gz

SWU_4/sub-0025814/ses-1/mri/p2sub-0025814_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0W/Zp/MD5E-s459639--de0c48f0129bc366817a2f5d30dfd2ed.nii.gz/MD5E-s459639--de0c48f0129bc366817a2f5d30dfd2ed.nii.gz

SWU_4/sub-0025814/ses-1/mri/p3sub-0025814_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025814/ses-1/mri/rp1sub-0025814_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025814/ses-1/mri/rp2sub-0025814_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025814/ses-1/mri/rp3sub-0025814_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025814/ses-1/mri/t_sub-0025814_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/fP/MD5E-s285--040c46e8962d56cbba8c4354748b614f.mat/MD5E-s285--040c46e8962d56cbba8c4354748b614f.mat

SWU_4/sub-0025814/ses-1/mri/t_sub-0025814_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025814/ses-1/mri/thalamus_sub-0025814_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025814/ses-1/mri/thalamus_sub-0025814_ses-1_run-1_T1w.nii.gz

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