[DATALAD RUNCMD] Compute XHCUMS/sub-0025999/ses-4

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0025999/ses-4/anat/sub-0025999_ses-4_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0025999/ses-4"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0025999/ses-4/label/catROI_sub-0025999_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/K7/MD5E-s61331--7742ddb1d8b0d47c758e130a29cc7170.mat/MD5E-s61331--7742ddb1d8b0d47c758e130a29cc7170.mat

XHCUMS/sub-0025999/ses-4/label/catROI_sub-0025999_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/z0/MD5E-s188829--5ac791d1ab26537d9a15cae74f85e667.xml/MD5E-s188829--5ac791d1ab26537d9a15cae74f85e667.xml

XHCUMS/sub-0025999/ses-4/label/catROIs_sub-0025999_ses-4_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/7G/MD5E-s120128--09a40afcbd208299c9847af1025f47c2.mat/MD5E-s120128--09a40afcbd208299c9847af1025f47c2.mat

XHCUMS/sub-0025999/ses-4/label/catROIs_sub-0025999_ses-4_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mj/XQ/MD5E-s332126--96063491b0b603f0d7d9ecb118ef2eb4.xml/MD5E-s332126--96063491b0b603f0d7d9ecb118ef2eb4.xml

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/6Q/MD5E-s170918--43e287c9452a14df83a2d2d7d0970b89.nii.gz/MD5E-s170918--43e287c9452a14df83a2d2d7d0970b89.nii.gz

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kW/kp/MD5E-s190985--0b7ec064a4b788c501eda76fd1282651.nii.gz/MD5E-s190985--0b7ec064a4b788c501eda76fd1282651.nii.gz

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JJ/g9/MD5E-s257946--c0fe419fff00ea9843e54690351487e0.nii.gz/MD5E-s257946--c0fe419fff00ea9843e54690351487e0.nii.gz

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0025999/ses-4/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/FK/MD5E-s287129--02e2449afc2216f7d0e9c7e1c38d6437.nii.gz/MD5E-s287129--02e2449afc2216f7d0e9c7e1c38d6437.nii.gz

XHCUMS/sub-0025999/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0025999/ses-4/mri/Tian_Subcortex_S2_7T_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/ZM/MD5E-s25301--aa7ef3a4a773b696915815718d5c5de0.nii.gz/MD5E-s25301--aa7ef3a4a773b696915815718d5c5de0.nii.gz

XHCUMS/sub-0025999/ses-4/mri/aal3_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

XHCUMS/sub-0025999/ses-4/mri/aal3_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/5J/MD5E-s193992--e349a8563f67fd7d2c1e2712259ea3e1.nii.gz/MD5E-s193992--e349a8563f67fd7d2c1e2712259ea3e1.nii.gz

XHCUMS/sub-0025999/ses-4/mri/anatomy3_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

XHCUMS/sub-0025999/ses-4/mri/anatomy3_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/qq/MD5E-s141761--fb073ce1ef04689f8afab9e8b5807322.nii.gz/MD5E-s141761--fb073ce1ef04689f8afab9e8b5807322.nii.gz

XHCUMS/sub-0025999/ses-4/mri/anon_misub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/67/vK/MD5E-s8534234--963219eab70796c0b3c8e7ac48a41eea.nii.gz/MD5E-s8534234--963219eab70796c0b3c8e7ac48a41eea.nii.gz

XHCUMS/sub-0025999/ses-4/mri/anon_msub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/Fq/MD5E-s8501126--fb47a7bcdecb4f27200b091b48c15e3c.nii.gz/MD5E-s8501126--fb47a7bcdecb4f27200b091b48c15e3c.nii.gz

XHCUMS/sub-0025999/ses-4/mri/cat_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/xW/MD5E-s104305--b4408b61a763f98d4c1570bf6f7f7223.nii.gz/MD5E-s104305--b4408b61a763f98d4c1570bf6f7f7223.nii.gz

XHCUMS/sub-0025999/ses-4/mri/cobra_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

XHCUMS/sub-0025999/ses-4/mri/cobra_sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/hammers_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

XHCUMS/sub-0025999/ses-4/mri/hammers_sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/ibsr_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

XHCUMS/sub-0025999/ses-4/mri/ibsr_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/vQ/MD5E-s160880--0580d4f31c32619704b3639215bb6afe.nii.gz/MD5E-s160880--0580d4f31c32619704b3639215bb6afe.nii.gz

XHCUMS/sub-0025999/ses-4/mri/it_sub-0025999_ses-4_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/2x/MD5E-s283--c708a159c639f19c800cade1913ad612.mat/MD5E-s283--c708a159c639f19c800cade1913ad612.mat

XHCUMS/sub-0025999/ses-4/mri/it_sub-0025999_ses-4_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/JW/MD5E-s283--e61041812e547f5db5e62529e9361b47.mat/MD5E-s283--e61041812e547f5db5e62529e9361b47.mat

XHCUMS/sub-0025999/ses-4/mri/iy_sub-0025999_ses-4_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/xF/MD5E-s49301778--5985367d4d6f969b81615c75ce720e8d.nii.gz/MD5E-s49301778--5985367d4d6f969b81615c75ce720e8d.nii.gz

XHCUMS/sub-0025999/ses-4/mri/julichbrain_sub-0025999_ses-4_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

XHCUMS/sub-0025999/ses-4/mri/julichbrain_sub-0025999_ses-4_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/5W/9V/MD5E-s206358--d0a67bd180d579079e80e0ae2b2980c3.nii.gz/MD5E-s206358--d0a67bd180d579079e80e0ae2b2980c3.nii.gz

XHCUMS/sub-0025999/ses-4/mri/lpba40_sub-0025999_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025999/ses-4/mri/lpba40_sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/m0wp1sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/m0wp2sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/m0wp3sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/mori_sub-0025999_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025999/ses-4/mri/mori_sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/mwp1sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/mwp2sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/mwp3sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/neuromorphometrics_sub-0025999_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025999/ses-4/mri/neuromorphometrics_sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/p0sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/p1sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/p2sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/p3sub-0025999_ses-4_run-1_T1w.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/rp1sub-0025999_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/rp2sub-0025999_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/rp3sub-0025999_ses-4_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025999/ses-4/mri/t_sub-0025999_ses-4_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025999/ses-4/mri/t_sub-0025999_ses-4_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025999/ses-4/mri/thalamus_sub-0025999_ses-4_run-1_T1w.csv

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XHCUMS/sub-0025999/ses-4/mri/thalamus_sub-0025999_ses-4_run-1_T1w.nii.gz

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