[DATALAD RUNCMD] Compute SWU_4/sub-0025771/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025771/ses-1/anat/sub-0025771_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025771/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025771/ses-1/label/catROI_sub-0025771_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/82/MD5E-s57956--06f61ccb3901e67fe47e6157edfdca4f.mat/MD5E-s57956--06f61ccb3901e67fe47e6157edfdca4f.mat

SWU_4/sub-0025771/ses-1/label/catROI_sub-0025771_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q6/MF/MD5E-s188540--906b3b59da3bf4119a493ce4c337e36e.xml/MD5E-s188540--906b3b59da3bf4119a493ce4c337e36e.xml

SWU_4/sub-0025771/ses-1/label/catROIs_sub-0025771_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/GM/MD5E-s120198--b400d9da0535f3805d201ad32bc1765d.mat/MD5E-s120198--b400d9da0535f3805d201ad32bc1765d.mat

SWU_4/sub-0025771/ses-1/label/catROIs_sub-0025771_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/05/MD5E-s332103--b0ec0007b2b2cb28c09818ac5e7d781b.xml/MD5E-s332103--b0ec0007b2b2cb28c09818ac5e7d781b.xml

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/m9/MD5E-s174396--a7452b6619f3a1dbec8464a28e8b5312.nii.gz/MD5E-s174396--a7452b6619f3a1dbec8464a28e8b5312.nii.gz

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9z/Vq/MD5E-s194791--b6998ba186db6104bbad46e8797beffb.nii.gz/MD5E-s194791--b6998ba186db6104bbad46e8797beffb.nii.gz

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mx/Mg/MD5E-s263466--b0c160340ef8abbcdb34ed4efce93fb3.nii.gz/MD5E-s263466--b0c160340ef8abbcdb34ed4efce93fb3.nii.gz

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025771/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/Gv/MD5E-s291419--f170686428a055f6931d69203888675f.nii.gz/MD5E-s291419--f170686428a055f6931d69203888675f.nii.gz

SWU_4/sub-0025771/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025771/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V7/XV/MD5E-s25476--097c4656a8afc58ebe8c1a36f396bcf8.nii.gz/MD5E-s25476--097c4656a8afc58ebe8c1a36f396bcf8.nii.gz

SWU_4/sub-0025771/ses-1/mri/aal3_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025771/ses-1/mri/aal3_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/Pm/MD5E-s195238--71901a1742feae6ddd2fbd8f741f3818.nii.gz/MD5E-s195238--71901a1742feae6ddd2fbd8f741f3818.nii.gz

SWU_4/sub-0025771/ses-1/mri/anatomy3_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025771/ses-1/mri/anatomy3_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/7V/MD5E-s144052--b985b3371817cc2fc5755047c8c8b1ab.nii.gz/MD5E-s144052--b985b3371817cc2fc5755047c8c8b1ab.nii.gz

SWU_4/sub-0025771/ses-1/mri/anon_misub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/X2/MD5E-s8892646--124edb1783d1322204536c7b098f19e4.nii.gz/MD5E-s8892646--124edb1783d1322204536c7b098f19e4.nii.gz

SWU_4/sub-0025771/ses-1/mri/anon_msub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g4/4Q/MD5E-s8845501--abef535b719c6e9e21271628f35b3710.nii.gz/MD5E-s8845501--abef535b719c6e9e21271628f35b3710.nii.gz

SWU_4/sub-0025771/ses-1/mri/cat_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9X/3K/MD5E-s102107--c507ebe3b9237145a14c9c07ee1dc9bb.nii.gz/MD5E-s102107--c507ebe3b9237145a14c9c07ee1dc9bb.nii.gz

SWU_4/sub-0025771/ses-1/mri/cobra_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025771/ses-1/mri/cobra_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/w6/MD5E-s47790--6f91b838f9bc6612be30439cbdf7b9da.nii.gz/MD5E-s47790--6f91b838f9bc6612be30439cbdf7b9da.nii.gz

SWU_4/sub-0025771/ses-1/mri/hammers_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025771/ses-1/mri/hammers_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mg/PQ/MD5E-s153197--b457acc032ec897cedeaf04d3232d093.nii.gz/MD5E-s153197--b457acc032ec897cedeaf04d3232d093.nii.gz

SWU_4/sub-0025771/ses-1/mri/ibsr_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025771/ses-1/mri/ibsr_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/m1/MD5E-s161712--649e864db372784316e956b7346db420.nii.gz/MD5E-s161712--649e864db372784316e956b7346db420.nii.gz

SWU_4/sub-0025771/ses-1/mri/it_sub-0025771_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/66/MD5E-s284--5ba1a029cdced9681b162731b49bff6d.mat/MD5E-s284--5ba1a029cdced9681b162731b49bff6d.mat

SWU_4/sub-0025771/ses-1/mri/it_sub-0025771_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/Qg/MD5E-s283--d42853a124ece4b6d559b0592a79c05b.mat/MD5E-s283--d42853a124ece4b6d559b0592a79c05b.mat

SWU_4/sub-0025771/ses-1/mri/iy_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m5/9z/MD5E-s49301319--acde60a40001c3173bfdeb0aceebcdcc.nii.gz/MD5E-s49301319--acde60a40001c3173bfdeb0aceebcdcc.nii.gz

SWU_4/sub-0025771/ses-1/mri/julichbrain_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025771/ses-1/mri/julichbrain_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/Xx/MD5E-s209910--9c033c26b9811039edfd585137984fbe.nii.gz/MD5E-s209910--9c033c26b9811039edfd585137984fbe.nii.gz

SWU_4/sub-0025771/ses-1/mri/lpba40_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025771/ses-1/mri/lpba40_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/5f/MD5E-s150016--75e2cab8f645c03bd6d972fe5a949452.nii.gz/MD5E-s150016--75e2cab8f645c03bd6d972fe5a949452.nii.gz

SWU_4/sub-0025771/ses-1/mri/m0wp1sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/86/MD5E-s2583514--22fe5340869cde33aafe585dbe9a38ca.nii.gz/MD5E-s2583514--22fe5340869cde33aafe585dbe9a38ca.nii.gz

SWU_4/sub-0025771/ses-1/mri/m0wp2sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/7Q/MD5E-s2333032--0de39fc0a75f689cd9b73cfaba90f491.nii.gz/MD5E-s2333032--0de39fc0a75f689cd9b73cfaba90f491.nii.gz

SWU_4/sub-0025771/ses-1/mri/m0wp3sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pm/Z3/MD5E-s2484901--d696871dd69c0ad90b5bc0c17937e66e.nii.gz/MD5E-s2484901--d696871dd69c0ad90b5bc0c17937e66e.nii.gz

SWU_4/sub-0025771/ses-1/mri/mori_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025771/ses-1/mri/mori_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/19/MD5E-s180463--83154737107769afebfbcdde1e307c9f.nii.gz/MD5E-s180463--83154737107769afebfbcdde1e307c9f.nii.gz

SWU_4/sub-0025771/ses-1/mri/mwp1sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P2/17/MD5E-s2584969--b5395c1dd52b4cf153a4b09f8075483b.nii.gz/MD5E-s2584969--b5395c1dd52b4cf153a4b09f8075483b.nii.gz

SWU_4/sub-0025771/ses-1/mri/mwp2sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v8/45/MD5E-s2327228--125cc3eb1ba349113f146da04f31290b.nii.gz/MD5E-s2327228--125cc3eb1ba349113f146da04f31290b.nii.gz

SWU_4/sub-0025771/ses-1/mri/mwp3sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xM/k4/MD5E-s2481583--24978ba48815941c84044a920134a34c.nii.gz/MD5E-s2481583--24978ba48815941c84044a920134a34c.nii.gz

SWU_4/sub-0025771/ses-1/mri/neuromorphometrics_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025771/ses-1/mri/neuromorphometrics_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gW/g2/MD5E-s209211--bace2655d631ee1be852b0647b634e26.nii.gz/MD5E-s209211--bace2655d631ee1be852b0647b634e26.nii.gz

SWU_4/sub-0025771/ses-1/mri/p0sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zq/8K/MD5E-s692249--fa0a00f64d45a1db999f250a0c3b40c3.nii.gz/MD5E-s692249--fa0a00f64d45a1db999f250a0c3b40c3.nii.gz

SWU_4/sub-0025771/ses-1/mri/p1sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/5V/MD5E-s742258--848a8d7740b728d77bcb32d0afdea180.nii.gz/MD5E-s742258--848a8d7740b728d77bcb32d0afdea180.nii.gz

SWU_4/sub-0025771/ses-1/mri/p2sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/pg/MD5E-s498535--95f67367e0581db9e94a00f67dfca25c.nii.gz/MD5E-s498535--95f67367e0581db9e94a00f67dfca25c.nii.gz

SWU_4/sub-0025771/ses-1/mri/p3sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/fw/MD5E-s401204--d3298760b47005360760bef8099fd7e3.nii.gz/MD5E-s401204--d3298760b47005360760bef8099fd7e3.nii.gz

SWU_4/sub-0025771/ses-1/mri/rp1sub-0025771_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vx/Pw/MD5E-s457157--3bd508750e72fda6009bd8bb0d2b21ce.nii.gz/MD5E-s457157--3bd508750e72fda6009bd8bb0d2b21ce.nii.gz

SWU_4/sub-0025771/ses-1/mri/rp2sub-0025771_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/k5/MD5E-s320223--f3353f76ce141fd28608478f7208af6c.nii.gz/MD5E-s320223--f3353f76ce141fd28608478f7208af6c.nii.gz

SWU_4/sub-0025771/ses-1/mri/rp3sub-0025771_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/5Q/MD5E-s282571--f6f43924ea27eca355fa1bcf61ad3fb8.nii.gz/MD5E-s282571--f6f43924ea27eca355fa1bcf61ad3fb8.nii.gz

SWU_4/sub-0025771/ses-1/mri/t_sub-0025771_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/Vx/MD5E-s283--0bb63611c69971913b3948e8c05b002e.mat/MD5E-s283--0bb63611c69971913b3948e8c05b002e.mat

SWU_4/sub-0025771/ses-1/mri/t_sub-0025771_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/f4/MD5E-s284--5919e0fde06b1b2122ff58cb9c4c723f.mat/MD5E-s284--5919e0fde06b1b2122ff58cb9c4c723f.mat

SWU_4/sub-0025771/ses-1/mri/thalamus_sub-0025771_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025771/ses-1/mri/thalamus_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/mZ/MD5E-s16564--1cab5cbc4a9b80322757387cb6cd5554.nii.gz/MD5E-s16564--1cab5cbc4a9b80322757387cb6cd5554.nii.gz

SWU_4/sub-0025771/ses-1/mri/wj_sub-0025771_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/jq/MD5E-s5543922--bed074418c45e301d8b3d01f91b69c55.nii.gz/MD5E-s5543922--bed074418c45e301d8b3d01f91b69c55.nii.gz

SWU_4/sub-0025771/ses-1/mri/wmisub-0025771_ses-1_run-1_T1w.nii.gz

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