[DATALAD RUNCMD] Compute BNU_2/sub-0025944/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025944/ses-1/anat/sub-0025944_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025944/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025944/ses-1/label/catROI_sub-0025944_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qF/kj/MD5E-s57649--4065dc82386ca1756bddbbdc0abfb9fa.mat/MD5E-s57649--4065dc82386ca1756bddbbdc0abfb9fa.mat

BNU_2/sub-0025944/ses-1/label/catROI_sub-0025944_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/q4/MD5E-s188901--519b7b5e1a1f5c0e8c686a1744535001.xml/MD5E-s188901--519b7b5e1a1f5c0e8c686a1744535001.xml

BNU_2/sub-0025944/ses-1/label/catROIs_sub-0025944_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/Q9/MD5E-s120016--b21a007c7c4d7fbf7fee196a5b16f2ab.mat/MD5E-s120016--b21a007c7c4d7fbf7fee196a5b16f2ab.mat

BNU_2/sub-0025944/ses-1/label/catROIs_sub-0025944_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/04/MD5E-s332061--3bd9f051f25817020b585dd11a1965ea.xml/MD5E-s332061--3bd9f051f25817020b585dd11a1965ea.xml

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/1p/MD5E-s135206--1d1922deff0031072216c3ad37b9c67b.nii.gz/MD5E-s135206--1d1922deff0031072216c3ad37b9c67b.nii.gz

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/77/fF/MD5E-s150590--6b6d4c418dcf3f28484fd95c3b28e476.nii.gz/MD5E-s150590--6b6d4c418dcf3f28484fd95c3b28e476.nii.gz

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/Xw/MD5E-s203257--bd34964b0f7b946b45cbc4cdf53cd9ce.nii.gz/MD5E-s203257--bd34964b0f7b946b45cbc4cdf53cd9ce.nii.gz

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025944/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/36/MD5E-s225535--34928a3ba01fde5622889a5fbf2fc7c6.nii.gz/MD5E-s225535--34928a3ba01fde5622889a5fbf2fc7c6.nii.gz

BNU_2/sub-0025944/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025944/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/zK/MD5E-s19101--480f3c491e7fe689be8f03a4a4a98651.nii.gz/MD5E-s19101--480f3c491e7fe689be8f03a4a4a98651.nii.gz

BNU_2/sub-0025944/ses-1/mri/aal3_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025944/ses-1/mri/aal3_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/pG/MD5E-s152523--d7b3b878a4c10e5dcb8397c8d3699dfe.nii.gz/MD5E-s152523--d7b3b878a4c10e5dcb8397c8d3699dfe.nii.gz

BNU_2/sub-0025944/ses-1/mri/anatomy3_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025944/ses-1/mri/anatomy3_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/Mj/MD5E-s108778--b2c8f8d003428935c92b0e63536c28c9.nii.gz/MD5E-s108778--b2c8f8d003428935c92b0e63536c28c9.nii.gz

BNU_2/sub-0025944/ses-1/mri/anon_misub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8p/WX/MD5E-s3527515--da92a3bfb091d018d598152e6f1dac18.nii.gz/MD5E-s3527515--da92a3bfb091d018d598152e6f1dac18.nii.gz

BNU_2/sub-0025944/ses-1/mri/anon_msub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/1M/MD5E-s8473176--813307969a7da260ac0b9b58e30e1b74.nii.gz/MD5E-s8473176--813307969a7da260ac0b9b58e30e1b74.nii.gz

BNU_2/sub-0025944/ses-1/mri/cat_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/Jp/MD5E-s81040--d5c742455f65d0421857a5b61e122f98.nii.gz/MD5E-s81040--d5c742455f65d0421857a5b61e122f98.nii.gz

BNU_2/sub-0025944/ses-1/mri/cobra_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025944/ses-1/mri/cobra_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/pV/MD5E-s38144--d03643b6173f8c4d65aca64f2f093600.nii.gz/MD5E-s38144--d03643b6173f8c4d65aca64f2f093600.nii.gz

BNU_2/sub-0025944/ses-1/mri/hammers_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025944/ses-1/mri/hammers_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/34/MD5E-s119829--9015cd64165a555a291ffbee0ca05f1e.nii.gz/MD5E-s119829--9015cd64165a555a291ffbee0ca05f1e.nii.gz

BNU_2/sub-0025944/ses-1/mri/ibsr_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025944/ses-1/mri/ibsr_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/w2/MD5E-s124818--8d5def7627916cbaf9915a3f3b246b36.nii.gz/MD5E-s124818--8d5def7627916cbaf9915a3f3b246b36.nii.gz

BNU_2/sub-0025944/ses-1/mri/it_sub-0025944_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/k8/MD5E-s283--3cdb75936891ac201ed12244221de6dc.mat/MD5E-s283--3cdb75936891ac201ed12244221de6dc.mat

BNU_2/sub-0025944/ses-1/mri/it_sub-0025944_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vj/qf/MD5E-s283--30dd1829e4ebbca53bacde9eb8438ba7.mat/MD5E-s283--30dd1829e4ebbca53bacde9eb8438ba7.mat

BNU_2/sub-0025944/ses-1/mri/iy_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9F/0f/MD5E-s31686287--1f21f473b62aaa1cef8afb6508a07364.nii.gz/MD5E-s31686287--1f21f473b62aaa1cef8afb6508a07364.nii.gz

BNU_2/sub-0025944/ses-1/mri/julichbrain_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025944/ses-1/mri/julichbrain_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K5/Kf/MD5E-s161690--26a0bfc73e030d31799d2267a953912e.nii.gz/MD5E-s161690--26a0bfc73e030d31799d2267a953912e.nii.gz

BNU_2/sub-0025944/ses-1/mri/lpba40_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025944/ses-1/mri/lpba40_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/52/MD5E-s116780--770a9fcf6baa824bb2dc89ed375aff60.nii.gz/MD5E-s116780--770a9fcf6baa824bb2dc89ed375aff60.nii.gz

BNU_2/sub-0025944/ses-1/mri/m0wp1sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/9k/MD5E-s2589734--15efb1a72be3366d223b4034787c51f1.nii.gz/MD5E-s2589734--15efb1a72be3366d223b4034787c51f1.nii.gz

BNU_2/sub-0025944/ses-1/mri/m0wp2sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/16/f1/MD5E-s2271686--4563a0b48da9fa7e23b1de1d11df700e.nii.gz/MD5E-s2271686--4563a0b48da9fa7e23b1de1d11df700e.nii.gz

BNU_2/sub-0025944/ses-1/mri/m0wp3sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/pm/MD5E-s2487368--039bc07abf13f69a825176de0e049a47.nii.gz/MD5E-s2487368--039bc07abf13f69a825176de0e049a47.nii.gz

BNU_2/sub-0025944/ses-1/mri/mori_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025944/ses-1/mri/mori_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/jf/MD5E-s140270--839f1a9b261be5948e8c215cb169874a.nii.gz/MD5E-s140270--839f1a9b261be5948e8c215cb169874a.nii.gz

BNU_2/sub-0025944/ses-1/mri/mwp1sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jz/P7/MD5E-s2596909--9e6febdccc99c97a922505d74dfbafa7.nii.gz/MD5E-s2596909--9e6febdccc99c97a922505d74dfbafa7.nii.gz

BNU_2/sub-0025944/ses-1/mri/mwp2sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/24/MD5E-s2277642--48d67dc2eecc9c3485bc4eb1246cbf46.nii.gz/MD5E-s2277642--48d67dc2eecc9c3485bc4eb1246cbf46.nii.gz

BNU_2/sub-0025944/ses-1/mri/mwp3sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/Z8/MD5E-s2484019--ebec705d210d79691ef3e5056b4badad.nii.gz/MD5E-s2484019--ebec705d210d79691ef3e5056b4badad.nii.gz

BNU_2/sub-0025944/ses-1/mri/neuromorphometrics_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025944/ses-1/mri/neuromorphometrics_sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XQ/FP/MD5E-s162831--a56be00e1cbd64a362531b34c5b80fed.nii.gz/MD5E-s162831--a56be00e1cbd64a362531b34c5b80fed.nii.gz

BNU_2/sub-0025944/ses-1/mri/p0sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZK/pK/MD5E-s671810--6c7be03d9c7c59d24174c685ca55c9d6.nii.gz/MD5E-s671810--6c7be03d9c7c59d24174c685ca55c9d6.nii.gz

BNU_2/sub-0025944/ses-1/mri/p1sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/J6/MD5E-s685660--e855f53defdde89a7d79287137a9fcc6.nii.gz/MD5E-s685660--e855f53defdde89a7d79287137a9fcc6.nii.gz

BNU_2/sub-0025944/ses-1/mri/p2sub-0025944_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/pv/MD5E-s451235--f32ec46f6e9565185d79faae12039fe9.nii.gz/MD5E-s451235--f32ec46f6e9565185d79faae12039fe9.nii.gz

BNU_2/sub-0025944/ses-1/mri/p3sub-0025944_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025944/ses-1/mri/rp1sub-0025944_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025944/ses-1/mri/rp2sub-0025944_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025944/ses-1/mri/rp3sub-0025944_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025944/ses-1/mri/t_sub-0025944_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/fx/MD5E-s283--14a0c65d0f69755f55a12832cc565b52.mat/MD5E-s283--14a0c65d0f69755f55a12832cc565b52.mat

BNU_2/sub-0025944/ses-1/mri/t_sub-0025944_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/15/MD5E-s284--f79822d3e5e840ee20494fbdde8ec307.mat/MD5E-s284--f79822d3e5e840ee20494fbdde8ec307.mat

BNU_2/sub-0025944/ses-1/mri/thalamus_sub-0025944_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_2/sub-0025944/ses-1/mri/thalamus_sub-0025944_ses-1_run-1_T1w.nii.gz

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