[DATALAD RUNCMD] Compute NYU_2/sub-0025152/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025152/ses-1/anat/sub-0025152_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025152/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025152/ses-1/label/catROI_sub-0025152_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/4q/MD5E-s58413--0c8cbd34bf63ff489ccc4e064aab3097.mat/MD5E-s58413--0c8cbd34bf63ff489ccc4e064aab3097.mat

NYU_2/sub-0025152/ses-1/label/catROI_sub-0025152_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/wZ/MD5E-s188450--3958db932c15b77f71750f58e3d60fc9.xml/MD5E-s188450--3958db932c15b77f71750f58e3d60fc9.xml

NYU_2/sub-0025152/ses-1/label/catROI_sub-0025152_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JQ/JQ/MD5E-s58371--5115adb003e10e984c3756657a9b732c.mat/MD5E-s58371--5115adb003e10e984c3756657a9b732c.mat

NYU_2/sub-0025152/ses-1/label/catROI_sub-0025152_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/88/j4/MD5E-s188428--64dacc31c402ed8416633bca01be288f.xml/MD5E-s188428--64dacc31c402ed8416633bca01be288f.xml

NYU_2/sub-0025152/ses-1/label/catROIs_sub-0025152_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/qk/MD5E-s120226--5b68bc9ce4b6adb2781bdc7ea8022016.mat/MD5E-s120226--5b68bc9ce4b6adb2781bdc7ea8022016.mat

NYU_2/sub-0025152/ses-1/label/catROIs_sub-0025152_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/ZQ/MD5E-s332120--eb4f0a5e7109006276dbcdaa9acc4790.xml/MD5E-s332120--eb4f0a5e7109006276dbcdaa9acc4790.xml

NYU_2/sub-0025152/ses-1/label/catROIs_sub-0025152_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xz/Vg/MD5E-s120222--c97b620f3a5961b6e317ee4e6fad65dd.mat/MD5E-s120222--c97b620f3a5961b6e317ee4e6fad65dd.mat

NYU_2/sub-0025152/ses-1/label/catROIs_sub-0025152_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/v5/K3/MD5E-s332202--5e22453b4fea35f481da947414ed7602.xml/MD5E-s332202--5e22453b4fea35f481da947414ed7602.xml

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/5g/MD5E-s165852--9718e25e97fe9f09242c836048998493.nii.gz/MD5E-s165852--9718e25e97fe9f09242c836048998493.nii.gz

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3v/Xj/MD5E-s166564--c6f8948c79be5eb0cd1f5f5a12dea619.nii.gz/MD5E-s166564--c6f8948c79be5eb0cd1f5f5a12dea619.nii.gz

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/1Q/MD5E-s186613--639ae16fe0b7b65a2686c7ff2b802830.nii.gz/MD5E-s186613--639ae16fe0b7b65a2686c7ff2b802830.nii.gz

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PW/3j/MD5E-s186909--f186ab0877a11dbb6e5598b1beb102f3.nii.gz/MD5E-s186909--f186ab0877a11dbb6e5598b1beb102f3.nii.gz

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4p/gJ/MD5E-s248450--2c3204eaee68dffd0f2b34e7fb9d82b5.nii.gz/MD5E-s248450--2c3204eaee68dffd0f2b34e7fb9d82b5.nii.gz

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/25/G4/MD5E-s248804--108fd418de368cc909bd072e5ca63719.nii.gz/MD5E-s248804--108fd418de368cc909bd072e5ca63719.nii.gz

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/Xx/MD5E-s278035--b90c3672b1ad6faffac46a781b646c77.nii.gz/MD5E-s278035--b90c3672b1ad6faffac46a781b646c77.nii.gz

NYU_2/sub-0025152/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xg/8J/MD5E-s278286--4b3b0556a4c9b374884a302c7364a5ea.nii.gz/MD5E-s278286--4b3b0556a4c9b374884a302c7364a5ea.nii.gz

NYU_2/sub-0025152/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MM/gz/MD5E-s21167--c418d252b9ea3543873787ed9d9faf94.nii.gz/MD5E-s21167--c418d252b9ea3543873787ed9d9faf94.nii.gz

NYU_2/sub-0025152/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k1/50/MD5E-s21341--c60f47e03ee365dd0d6b5a9ab170c9d1.nii.gz/MD5E-s21341--c60f47e03ee365dd0d6b5a9ab170c9d1.nii.gz

NYU_2/sub-0025152/ses-1/mri/aal3_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/07/MD5E-s187019--296844c318004c91bbe43739a3399c58.nii.gz/MD5E-s187019--296844c318004c91bbe43739a3399c58.nii.gz

NYU_2/sub-0025152/ses-1/mri/aal3_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vg/pz/MD5E-s187464--af7b5b3868feb76645fe4ee531f056b4.nii.gz/MD5E-s187464--af7b5b3868feb76645fe4ee531f056b4.nii.gz

NYU_2/sub-0025152/ses-1/mri/anatomy3_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/5k/MD5E-s133490--9c595105a44cb91bf477b755bde44e32.nii.gz/MD5E-s133490--9c595105a44cb91bf477b755bde44e32.nii.gz

NYU_2/sub-0025152/ses-1/mri/anatomy3_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ff/1Z/MD5E-s134220--26f4ceae7ad69e49c7073cc6c9e49737.nii.gz/MD5E-s134220--26f4ceae7ad69e49c7073cc6c9e49737.nii.gz

NYU_2/sub-0025152/ses-1/mri/anon_misub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/8K/MD5E-s4200287--6fc4882af990da1eaf1d2b2b28809144.nii.gz/MD5E-s4200287--6fc4882af990da1eaf1d2b2b28809144.nii.gz

NYU_2/sub-0025152/ses-1/mri/anon_misub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/93/78/MD5E-s4214109--d71a6ea9624b829760ead13d4f09c923.nii.gz/MD5E-s4214109--d71a6ea9624b829760ead13d4f09c923.nii.gz

NYU_2/sub-0025152/ses-1/mri/anon_msub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/VM/MD5E-s8214356--894315f6bd8a8da46a1211c2f2868db3.nii.gz/MD5E-s8214356--894315f6bd8a8da46a1211c2f2868db3.nii.gz

NYU_2/sub-0025152/ses-1/mri/anon_msub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w0/FX/MD5E-s7900892--500c8f6b44c95893908077d31a424b3f.nii.gz/MD5E-s7900892--500c8f6b44c95893908077d31a424b3f.nii.gz

NYU_2/sub-0025152/ses-1/mri/cat_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/Fz/MD5E-s105532--5694edb506fb362a9e8e527f6d597fab.nii.gz/MD5E-s105532--5694edb506fb362a9e8e527f6d597fab.nii.gz

NYU_2/sub-0025152/ses-1/mri/cat_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q0/5q/MD5E-s105370--e33a145ca4c14832516735fc4fdab179.nii.gz/MD5E-s105370--e33a145ca4c14832516735fc4fdab179.nii.gz

NYU_2/sub-0025152/ses-1/mri/cobra_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/9Q/MD5E-s43798--a5196698874c590e1980ad3e5b6ca871.nii.gz/MD5E-s43798--a5196698874c590e1980ad3e5b6ca871.nii.gz

NYU_2/sub-0025152/ses-1/mri/cobra_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Ww/Wp/MD5E-s44046--ccadfcbd014f69437cf534aca5a7333d.nii.gz/MD5E-s44046--ccadfcbd014f69437cf534aca5a7333d.nii.gz

NYU_2/sub-0025152/ses-1/mri/hammers_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/vq/MD5E-s144644--bcb2148dcb327d601c039c56c92c107c.nii.gz/MD5E-s144644--bcb2148dcb327d601c039c56c92c107c.nii.gz

NYU_2/sub-0025152/ses-1/mri/hammers_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025152/ses-1/mri/ibsr_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025152/ses-1/mri/ibsr_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025152/ses-1/mri/it_sub-0025152_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z8/Zm/MD5E-s284--837b8b256c639df44bdaf2d4bbb54e55.mat/MD5E-s284--837b8b256c639df44bdaf2d4bbb54e55.mat

NYU_2/sub-0025152/ses-1/mri/it_sub-0025152_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/1q/MD5E-s284--d2d736c86e25470188c08f92af0927fb.mat/MD5E-s284--d2d736c86e25470188c08f92af0927fb.mat

NYU_2/sub-0025152/ses-1/mri/it_sub-0025152_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025152/ses-1/mri/it_sub-0025152_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025152/ses-1/mri/iy_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025152/ses-1/mri/iy_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025152/ses-1/mri/julichbrain_sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025152/ses-1/mri/julichbrain_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025152/ses-1/mri/lpba40_sub-0025152_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/lpba40_sub-0025152_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025152/ses-1/mri/m0wp1sub-0025152_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/m0wp1sub-0025152_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/m0wp2sub-0025152_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025152/ses-1/mri/m0wp2sub-0025152_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/m0wp3sub-0025152_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/m0wp3sub-0025152_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/mori_sub-0025152_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/mori_sub-0025152_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/mwp1sub-0025152_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/mwp1sub-0025152_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025152/ses-1/mri/mwp2sub-0025152_ses-1_run-1_T1w.nii.gz

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