[DATALAD RUNCMD] Compute NYU_2/sub-0025135/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025135/ses-1/anat/sub-0025135_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025135/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025135/ses-1/label/catROI_sub-0025135_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/kg/MD5E-s58080--daf120cf3363a212336c136f53bb3a67.mat/MD5E-s58080--daf120cf3363a212336c136f53bb3a67.mat

NYU_2/sub-0025135/ses-1/label/catROI_sub-0025135_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/FK/MD5E-s189124--d543fa0e9f22c28bdf2b8e3edbcafaa5.xml/MD5E-s189124--d543fa0e9f22c28bdf2b8e3edbcafaa5.xml

NYU_2/sub-0025135/ses-1/label/catROI_sub-0025135_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/F6/MJ/MD5E-s57987--4e8fb516fa55c397bf1e3a36ce1d7947.mat/MD5E-s57987--4e8fb516fa55c397bf1e3a36ce1d7947.mat

NYU_2/sub-0025135/ses-1/label/catROI_sub-0025135_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Zw/5j/MD5E-s189244--7494df1d5a47691b7862de263641a561.xml/MD5E-s189244--7494df1d5a47691b7862de263641a561.xml

NYU_2/sub-0025135/ses-1/label/catROIs_sub-0025135_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/Xp/MD5E-s120217--6f583e05dea9f77d35979315397579eb.mat/MD5E-s120217--6f583e05dea9f77d35979315397579eb.mat

NYU_2/sub-0025135/ses-1/label/catROIs_sub-0025135_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zj/f1/MD5E-s332100--2cd7160aecbab7df405965a1d43ab380.xml/MD5E-s332100--2cd7160aecbab7df405965a1d43ab380.xml

NYU_2/sub-0025135/ses-1/label/catROIs_sub-0025135_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9w/75/MD5E-s120123--458737b7700f02b236b4b7cc1594f2de.mat/MD5E-s120123--458737b7700f02b236b4b7cc1594f2de.mat

NYU_2/sub-0025135/ses-1/label/catROIs_sub-0025135_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zz/mG/MD5E-s332039--459ee46548861bd1c58cc7fe17abcccd.xml/MD5E-s332039--459ee46548861bd1c58cc7fe17abcccd.xml

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/MF/MD5E-s143875--5d7d29fd7d3ce0d62000d994843f754c.nii.gz/MD5E-s143875--5d7d29fd7d3ce0d62000d994843f754c.nii.gz

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JZ/7k/MD5E-s143596--c7b8fc9e42c5cbbd6d997f00b1611c0d.nii.gz/MD5E-s143596--c7b8fc9e42c5cbbd6d997f00b1611c0d.nii.gz

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mv/1f/MD5E-s158984--8f4d92728064ae91a93665ebf938bfcd.nii.gz/MD5E-s158984--8f4d92728064ae91a93665ebf938bfcd.nii.gz

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xQ/KP/MD5E-s159043--b7691dc42b3436d0995f3f5bdf9f9e87.nii.gz/MD5E-s159043--b7691dc42b3436d0995f3f5bdf9f9e87.nii.gz

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0j/VG/MD5E-s214696--4fd2ab1f71744d6f0b72d27715eacd7b.nii.gz/MD5E-s214696--4fd2ab1f71744d6f0b72d27715eacd7b.nii.gz

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1w/Z5/MD5E-s214813--8b0c6fcb882019a23e9355c25b761e39.nii.gz/MD5E-s214813--8b0c6fcb882019a23e9355c25b761e39.nii.gz

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/4Q/MD5E-s237081--5038bd18269f1c0bf28e2776ee6bf813.nii.gz/MD5E-s237081--5038bd18269f1c0bf28e2776ee6bf813.nii.gz

NYU_2/sub-0025135/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/WX/k8/MD5E-s236990--e5def19ffd51a99fdafb45465e9852da.nii.gz/MD5E-s236990--e5def19ffd51a99fdafb45465e9852da.nii.gz

NYU_2/sub-0025135/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/4F/MD5E-s19278--762c1bc60fbc1097b29689acac6fa3bd.nii.gz/MD5E-s19278--762c1bc60fbc1097b29689acac6fa3bd.nii.gz

NYU_2/sub-0025135/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8Z/JV/MD5E-s19096--2d2c6db7336a351d8365902194f5eb55.nii.gz/MD5E-s19096--2d2c6db7336a351d8365902194f5eb55.nii.gz

NYU_2/sub-0025135/ses-1/mri/aal3_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/3k/MD5E-s160962--0cc9b56b64d2aff31d05f9517768b6b3.nii.gz/MD5E-s160962--0cc9b56b64d2aff31d05f9517768b6b3.nii.gz

NYU_2/sub-0025135/ses-1/mri/aal3_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zg/jk/MD5E-s161393--d4a49d6ab4de4de7abbf1e4db7a92f8e.nii.gz/MD5E-s161393--d4a49d6ab4de4de7abbf1e4db7a92f8e.nii.gz

NYU_2/sub-0025135/ses-1/mri/anatomy3_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GK/MK/MD5E-s114470--7f5e85b201a74c8d0be82be897217cee.nii.gz/MD5E-s114470--7f5e85b201a74c8d0be82be897217cee.nii.gz

NYU_2/sub-0025135/ses-1/mri/anatomy3_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8p/jf/MD5E-s113849--04a91fcf3607cb1d72b8d225fbd80d87.nii.gz/MD5E-s113849--04a91fcf3607cb1d72b8d225fbd80d87.nii.gz

NYU_2/sub-0025135/ses-1/mri/anon_misub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/PW/MD5E-s4123669--4eb56b6bf2d97c0113b235ccd6ab7f78.nii.gz/MD5E-s4123669--4eb56b6bf2d97c0113b235ccd6ab7f78.nii.gz

NYU_2/sub-0025135/ses-1/mri/anon_misub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4w/Gz/MD5E-s4117853--4ceb384c36b13fdaaaad524a211aac33.nii.gz/MD5E-s4117853--4ceb384c36b13fdaaaad524a211aac33.nii.gz

NYU_2/sub-0025135/ses-1/mri/anon_msub-0025135_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pJ/qg/MD5E-s9612464--2edc030a492e083fc51c7b95c3599c9a.nii.gz/MD5E-s9612464--2edc030a492e083fc51c7b95c3599c9a.nii.gz

NYU_2/sub-0025135/ses-1/mri/anon_msub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/81/kf/MD5E-s9518278--3beaab22e58328503a8f210036c7a6eb.nii.gz/MD5E-s9518278--3beaab22e58328503a8f210036c7a6eb.nii.gz

NYU_2/sub-0025135/ses-1/mri/cat_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/X8/MD5E-s90062--093336d8398fcd51e2de11d6e6eedd2a.nii.gz/MD5E-s90062--093336d8398fcd51e2de11d6e6eedd2a.nii.gz

NYU_2/sub-0025135/ses-1/mri/cat_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mz/Gm/MD5E-s90066--ce00bb7b07ac23ace7879fa5399d5490.nii.gz/MD5E-s90066--ce00bb7b07ac23ace7879fa5399d5490.nii.gz

NYU_2/sub-0025135/ses-1/mri/cobra_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/jq/MD5E-s39445--bb0cfdc31c911496b85f7758deaed016.nii.gz/MD5E-s39445--bb0cfdc31c911496b85f7758deaed016.nii.gz

NYU_2/sub-0025135/ses-1/mri/cobra_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025135/ses-1/mri/hammers_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/69/MD5E-s126978--f6cadd36e6b520311d9a1bba0e1da03c.nii.gz/MD5E-s126978--f6cadd36e6b520311d9a1bba0e1da03c.nii.gz

NYU_2/sub-0025135/ses-1/mri/hammers_sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/ibsr_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/m8/MD5E-s134224--336bdb21a1a23e94e00a1331342d6fcd.nii.gz/MD5E-s134224--336bdb21a1a23e94e00a1331342d6fcd.nii.gz

NYU_2/sub-0025135/ses-1/mri/ibsr_sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/it_sub-0025135_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025135/ses-1/mri/it_sub-0025135_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025135/ses-1/mri/it_sub-0025135_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025135/ses-1/mri/it_sub-0025135_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025135/ses-1/mri/iy_sub-0025135_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/iy_sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/julichbrain_sub-0025135_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/julichbrain_sub-0025135_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025135/ses-1/mri/lpba40_sub-0025135_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025135/ses-1/mri/lpba40_sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/m0wp1sub-0025135_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/m0wp1sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/m0wp2sub-0025135_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/m0wp2sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/m0wp3sub-0025135_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/m0wp3sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/mori_sub-0025135_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/mori_sub-0025135_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/mwp1sub-0025135_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025135/ses-1/mri/mwp1sub-0025135_ses-1_run-2_T1w.nii.gz

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