[DATALAD RUNCMD] Compute SWU_1/sub-0027216/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027216/ses-1/anat/sub-0027216_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027216/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027216/ses-1/label/catROI_sub-0027216_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/G9/p2/MD5E-s58603--3f9d5f0e148a36137d9975a8fdec0805.mat/MD5E-s58603--3f9d5f0e148a36137d9975a8fdec0805.mat

SWU_1/sub-0027216/ses-1/label/catROI_sub-0027216_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4K/Vv/MD5E-s188773--7c13610c8512cf5f61784c8cadfe5b35.xml/MD5E-s188773--7c13610c8512cf5f61784c8cadfe5b35.xml

SWU_1/sub-0027216/ses-1/label/catROI_sub-0027216_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/6q/MD5E-s58593--c80b476667d48e19812cd601032ba185.mat/MD5E-s58593--c80b476667d48e19812cd601032ba185.mat

SWU_1/sub-0027216/ses-1/label/catROI_sub-0027216_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/jp/MD5E-s188704--d319687509b8cb8a98283092d1bc1a52.xml/MD5E-s188704--d319687509b8cb8a98283092d1bc1a52.xml

SWU_1/sub-0027216/ses-1/label/catROIs_sub-0027216_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KM/kQ/MD5E-s120104--421bf2dadc5e0ed02c3c7231822b8579.mat/MD5E-s120104--421bf2dadc5e0ed02c3c7231822b8579.mat

SWU_1/sub-0027216/ses-1/label/catROIs_sub-0027216_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pG/z7/MD5E-s332070--79b50af0a2d644e03e261e2f4aa94f83.xml/MD5E-s332070--79b50af0a2d644e03e261e2f4aa94f83.xml

SWU_1/sub-0027216/ses-1/label/catROIs_sub-0027216_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/2M/MD5E-s120104--fc45c5df3e22375fe47fc48383486848.mat/MD5E-s120104--fc45c5df3e22375fe47fc48383486848.mat

SWU_1/sub-0027216/ses-1/label/catROIs_sub-0027216_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/Gk/MD5E-s332141--7146cfbcaaa30ecf0326f8a96ea02cf7.xml/MD5E-s332141--7146cfbcaaa30ecf0326f8a96ea02cf7.xml

SWU_1/sub-0027216/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W0/13/MD5E-s176040--6d9fefd5ee4a56d1496acca7adc11346.nii.gz/MD5E-s176040--6d9fefd5ee4a56d1496acca7adc11346.nii.gz

SWU_1/sub-0027216/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027216/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g3/zJ/MD5E-s196172--057fa2ec5fc140753eb2a9b57b5753d3.nii.gz/MD5E-s196172--057fa2ec5fc140753eb2a9b57b5753d3.nii.gz

SWU_1/sub-0027216/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/Fv/MD5E-s196398--9029d72ed2c4360e67efeedbb3454552.nii.gz/MD5E-s196398--9029d72ed2c4360e67efeedbb3454552.nii.gz

SWU_1/sub-0027216/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f5/fM/MD5E-s264776--40fb7e899a4455d24d2e28bb42d323c0.nii.gz/MD5E-s264776--40fb7e899a4455d24d2e28bb42d323c0.nii.gz

SWU_1/sub-0027216/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027216/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/2z/MD5E-s293698--1d92e700dbe02f28849b50782b9c4458.nii.gz/MD5E-s293698--1d92e700dbe02f28849b50782b9c4458.nii.gz

SWU_1/sub-0027216/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/8q/MD5E-s25839--2287d04c9536ac72507175605e954d20.nii.gz/MD5E-s25839--2287d04c9536ac72507175605e954d20.nii.gz

SWU_1/sub-0027216/ses-1/mri/aal3_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ZX/FV/MD5E-s199887--7ea0efd88d2c1b467a32ef88ddafea3c.nii.gz/MD5E-s199887--7ea0efd88d2c1b467a32ef88ddafea3c.nii.gz

SWU_1/sub-0027216/ses-1/mri/aal3_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/Xx/MD5E-s199882--478e7aad621d27355792cc126a218acc.nii.gz/MD5E-s199882--478e7aad621d27355792cc126a218acc.nii.gz

SWU_1/sub-0027216/ses-1/mri/anatomy3_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/anatomy3_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2F/zp/MD5E-s144929--4261b79c297269570484b2b5c75650f1.nii.gz/MD5E-s144929--4261b79c297269570484b2b5c75650f1.nii.gz

SWU_1/sub-0027216/ses-1/mri/anon_misub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/anon_misub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fk/4p/MD5E-s9581813--d7a261ed39b0281fd48f08c88dfa0242.nii.gz/MD5E-s9581813--d7a261ed39b0281fd48f08c88dfa0242.nii.gz

SWU_1/sub-0027216/ses-1/mri/anon_msub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/anon_msub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027216/ses-1/mri/cat_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Z5/g5/MD5E-s109352--bd2debc0bb957dd04d2d4527cfaf8b44.nii.gz/MD5E-s109352--bd2debc0bb957dd04d2d4527cfaf8b44.nii.gz

SWU_1/sub-0027216/ses-1/mri/cat_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f8/Zz/MD5E-s109735--fece60637f657f509aa85f97522993fa.nii.gz/MD5E-s109735--fece60637f657f509aa85f97522993fa.nii.gz

SWU_1/sub-0027216/ses-1/mri/cobra_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/cobra_sub-0027216_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027216/ses-1/mri/hammers_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/hammers_sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/ibsr_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/ibsr_sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/it_sub-0027216_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gK/4q/MD5E-s282--611b7fd0122f706216bcbadaec407116.mat/MD5E-s282--611b7fd0122f706216bcbadaec407116.mat

SWU_1/sub-0027216/ses-1/mri/it_sub-0027216_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/it_sub-0027216_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027216/ses-1/mri/it_sub-0027216_ses-1_run-2_T1w_rigid_reorient.mat

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SWU_1/sub-0027216/ses-1/mri/iy_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/iy_sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/julichbrain_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/julichbrain_sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/lpba40_sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/lpba40_sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/m0wp1sub-0027216_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/m0wp1sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/m0wp2sub-0027216_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027216/ses-1/mri/m0wp2sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/m0wp3sub-0027216_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/m0wp3sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/mori_sub-0027216_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/mori_sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/mwp1sub-0027216_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/mwp1sub-0027216_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027216/ses-1/mri/mwp2sub-0027216_ses-1_run-1_T1w.nii.gz

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