[DATALAD RUNCMD] Compute MRN/sub-0027028/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027028/ses-1/anat/sub-0027028_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027028/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027028/ses-1/label/catROI_sub-0027028_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/1f/MD5E-s61301--27d15b3b625f76ce940518d548812d41.mat/MD5E-s61301--27d15b3b625f76ce940518d548812d41.mat

MRN/sub-0027028/ses-1/label/catROI_sub-0027028_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1v/5V/MD5E-s189221--336560f2337bf24ba802090a4afda250.xml/MD5E-s189221--336560f2337bf24ba802090a4afda250.xml

MRN/sub-0027028/ses-1/label/catROIs_sub-0027028_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/04/MD5E-s120101--d285005521df93395626d24aa5af4ac8.mat/MD5E-s120101--d285005521df93395626d24aa5af4ac8.mat

MRN/sub-0027028/ses-1/label/catROIs_sub-0027028_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/KP/MD5E-s332095--acd0ec5f3c46c0c0f2817e89c436096a.xml/MD5E-s332095--acd0ec5f3c46c0c0f2817e89c436096a.xml

MRN/sub-0027028/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027028/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/6F/MD5E-s165246--d56db27281d76875bbf10745f7426997.nii.gz/MD5E-s165246--d56db27281d76875bbf10745f7426997.nii.gz

MRN/sub-0027028/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027028/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/12/MD5E-s184258--8a4e786737afa8daa9522a3d4cdfc598.nii.gz/MD5E-s184258--8a4e786737afa8daa9522a3d4cdfc598.nii.gz

MRN/sub-0027028/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027028/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1w/G4/MD5E-s245968--60f5701390480824bed74716efb6cb9f.nii.gz/MD5E-s245968--60f5701390480824bed74716efb6cb9f.nii.gz

MRN/sub-0027028/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027028/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/kQ/MD5E-s272898--cf4dd4a2004619db7c241eb248e26900.nii.gz/MD5E-s272898--cf4dd4a2004619db7c241eb248e26900.nii.gz

MRN/sub-0027028/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027028/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/0J/MD5E-s25948--52ac7a18f7ef759d058f1b2c18bf63f7.nii.gz/MD5E-s25948--52ac7a18f7ef759d058f1b2c18bf63f7.nii.gz

MRN/sub-0027028/ses-1/mri/aal3_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MRN/sub-0027028/ses-1/mri/aal3_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/Pg/MD5E-s185966--929230428ac18da5244c46afac139228.nii.gz/MD5E-s185966--929230428ac18da5244c46afac139228.nii.gz

MRN/sub-0027028/ses-1/mri/anatomy3_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027028/ses-1/mri/anatomy3_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jg/wx/MD5E-s134490--c04e452fa4b1fcb7dd898b76caf01d88.nii.gz/MD5E-s134490--c04e452fa4b1fcb7dd898b76caf01d88.nii.gz

MRN/sub-0027028/ses-1/mri/anon_misub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/1j/MD5E-s9192792--7c21ad66a73b05cdbac3ffe18c979cb6.nii.gz/MD5E-s9192792--7c21ad66a73b05cdbac3ffe18c979cb6.nii.gz

MRN/sub-0027028/ses-1/mri/anon_msub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/78/MD5E-s10303732--1a0e12d2be4d2c5d4b21a4e27d90baa8.nii.gz/MD5E-s10303732--1a0e12d2be4d2c5d4b21a4e27d90baa8.nii.gz

MRN/sub-0027028/ses-1/mri/cat_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k6/PK/MD5E-s96217--ccba2bb09f7f6441a8bd970d38a36ea9.nii.gz/MD5E-s96217--ccba2bb09f7f6441a8bd970d38a36ea9.nii.gz

MRN/sub-0027028/ses-1/mri/cobra_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027028/ses-1/mri/cobra_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/69/MD5E-s48283--82fd5d09918a85410799276cd2323e3e.nii.gz/MD5E-s48283--82fd5d09918a85410799276cd2323e3e.nii.gz

MRN/sub-0027028/ses-1/mri/hammers_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027028/ses-1/mri/hammers_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/3K/MD5E-s143888--37cf6deec1b9f0ba3e5b52647de8ab6e.nii.gz/MD5E-s143888--37cf6deec1b9f0ba3e5b52647de8ab6e.nii.gz

MRN/sub-0027028/ses-1/mri/ibsr_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027028/ses-1/mri/ibsr_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J7/3Q/MD5E-s152906--c44fde7d91f95390deb7980c2f024313.nii.gz/MD5E-s152906--c44fde7d91f95390deb7980c2f024313.nii.gz

MRN/sub-0027028/ses-1/mri/it_sub-0027028_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/2F/MD5E-s282--d7179bd8216706f90cccc658133401cc.mat/MD5E-s282--d7179bd8216706f90cccc658133401cc.mat

MRN/sub-0027028/ses-1/mri/it_sub-0027028_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/0Z/MD5E-s284--454923677666ed1a2251f191a5f41dff.mat/MD5E-s284--454923677666ed1a2251f191a5f41dff.mat

MRN/sub-0027028/ses-1/mri/iy_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/Fx/MD5E-s42197877--d8b901fec27740e0fe0c25db96ebf46e.nii.gz/MD5E-s42197877--d8b901fec27740e0fe0c25db96ebf46e.nii.gz

MRN/sub-0027028/ses-1/mri/julichbrain_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MRN/sub-0027028/ses-1/mri/julichbrain_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/K8/MD5E-s195201--e0a2c362f7e85c7e8c9bab6585e6328b.nii.gz/MD5E-s195201--e0a2c362f7e85c7e8c9bab6585e6328b.nii.gz

MRN/sub-0027028/ses-1/mri/lpba40_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MRN/sub-0027028/ses-1/mri/lpba40_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/m7/MD5E-s142144--1dfaf806a3621655ce22ae37fd614272.nii.gz/MD5E-s142144--1dfaf806a3621655ce22ae37fd614272.nii.gz

MRN/sub-0027028/ses-1/mri/m0wp1sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/ZJ/MD5E-s2582699--3109802d255337b5860105250b37fdc0.nii.gz/MD5E-s2582699--3109802d255337b5860105250b37fdc0.nii.gz

MRN/sub-0027028/ses-1/mri/m0wp2sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wv/KP/MD5E-s2282339--92a6ed1e24f6fac83ef1d25e2edcadb1.nii.gz/MD5E-s2282339--92a6ed1e24f6fac83ef1d25e2edcadb1.nii.gz

MRN/sub-0027028/ses-1/mri/m0wp3sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WK/Qq/MD5E-s2466904--b1577da6c9674b53e2363360b35e633f.nii.gz/MD5E-s2466904--b1577da6c9674b53e2363360b35e633f.nii.gz

MRN/sub-0027028/ses-1/mri/mori_sub-0027028_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MRN/sub-0027028/ses-1/mri/mori_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027028/ses-1/mri/mwp1sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/J9/MD5E-s2591805--eace9bfad82d551812ba6dfe150553d2.nii.gz/MD5E-s2591805--eace9bfad82d551812ba6dfe150553d2.nii.gz

MRN/sub-0027028/ses-1/mri/mwp2sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027028/ses-1/mri/mwp3sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027028/ses-1/mri/neuromorphometrics_sub-0027028_ses-1_run-1_T1w.csv

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MRN/sub-0027028/ses-1/mri/neuromorphometrics_sub-0027028_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027028/ses-1/mri/p0sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027028/ses-1/mri/p1sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027028/ses-1/mri/p2sub-0027028_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027028/ses-1/mri/p3sub-0027028_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027028/ses-1/mri/rp1sub-0027028_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027028/ses-1/mri/rp2sub-0027028_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027028/ses-1/mri/rp3sub-0027028_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027028/ses-1/mri/t_sub-0027028_ses-1_run-1_T1w_affine_reorient.mat

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MRN/sub-0027028/ses-1/mri/t_sub-0027028_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027028/ses-1/mri/thalamus_sub-0027028_ses-1_run-1_T1w.csv

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MRN/sub-0027028/ses-1/mri/thalamus_sub-0027028_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027028/ses-1/mri/wj_sub-0027028_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027028/ses-1/mri/wmisub-0027028_ses-1_run-1_T1w.nii.gz

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