[DATALAD RUNCMD] Compute SWU_4/sub-0025798/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025798/ses-2/anat/sub-0025798_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025798/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025798/ses-2/label/catROI_sub-0025798_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/Jp/MD5E-s61315--9ab8cbe91b5ef7ac509992c75dd91d5c.mat/MD5E-s61315--9ab8cbe91b5ef7ac509992c75dd91d5c.mat

SWU_4/sub-0025798/ses-2/label/catROI_sub-0025798_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/0g/MD5E-s188680--e03dcb11f9ed5a1191a7aa31b1c03038.xml/MD5E-s188680--e03dcb11f9ed5a1191a7aa31b1c03038.xml

SWU_4/sub-0025798/ses-2/label/catROIs_sub-0025798_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/ZK/MD5E-s120026--7aa574c5efaddcca01461c17fac4b933.mat/MD5E-s120026--7aa574c5efaddcca01461c17fac4b933.mat

SWU_4/sub-0025798/ses-2/label/catROIs_sub-0025798_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wm/Mv/MD5E-s332170--0a47e7f26c0b548e7a07ed1fbc21b016.xml/MD5E-s332170--0a47e7f26c0b548e7a07ed1fbc21b016.xml

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pQ/gf/MD5E-s180942--a94029b4eadbb509baa791645559556e.nii.gz/MD5E-s180942--a94029b4eadbb509baa791645559556e.nii.gz

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/9Q/MD5E-s202776--f18f9c53c4f89801213ca8a5a3ac06fc.nii.gz/MD5E-s202776--f18f9c53c4f89801213ca8a5a3ac06fc.nii.gz

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/w8/MD5E-s272707--bd08a8428c08751e2c8f37de56159209.nii.gz/MD5E-s272707--bd08a8428c08751e2c8f37de56159209.nii.gz

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025798/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/7G/MD5E-s302489--e28455765aa43e2c210d87ebfe6ed995.nii.gz/MD5E-s302489--e28455765aa43e2c210d87ebfe6ed995.nii.gz

SWU_4/sub-0025798/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025798/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/3V/MD5E-s25557--99753f2eb81fcff8908d0409b3f75615.nii.gz/MD5E-s25557--99753f2eb81fcff8908d0409b3f75615.nii.gz

SWU_4/sub-0025798/ses-2/mri/aal3_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025798/ses-2/mri/aal3_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wV/kg/MD5E-s202456--43461c3c2d06b445cf5382aa9b00d0c0.nii.gz/MD5E-s202456--43461c3c2d06b445cf5382aa9b00d0c0.nii.gz

SWU_4/sub-0025798/ses-2/mri/anatomy3_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025798/ses-2/mri/anatomy3_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/zj/MD5E-s149444--d3a28e2d6630521899da94de030a1e4a.nii.gz/MD5E-s149444--d3a28e2d6630521899da94de030a1e4a.nii.gz

SWU_4/sub-0025798/ses-2/mri/anon_misub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/gQ/MD5E-s11666016--967728a25d365bf01157c4bfbb590f9d.nii.gz/MD5E-s11666016--967728a25d365bf01157c4bfbb590f9d.nii.gz

SWU_4/sub-0025798/ses-2/mri/anon_msub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jV/8v/MD5E-s12771822--dde08d77563541a39e0952e63034797d.nii.gz/MD5E-s12771822--dde08d77563541a39e0952e63034797d.nii.gz

SWU_4/sub-0025798/ses-2/mri/cat_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QX/W3/MD5E-s111608--596a50c3d9011875b7842c1a24eba447.nii.gz/MD5E-s111608--596a50c3d9011875b7842c1a24eba447.nii.gz

SWU_4/sub-0025798/ses-2/mri/cobra_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025798/ses-2/mri/cobra_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/wp/MD5E-s51794--2b5c6492700ba241625ed06d237d37e9.nii.gz/MD5E-s51794--2b5c6492700ba241625ed06d237d37e9.nii.gz

SWU_4/sub-0025798/ses-2/mri/hammers_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025798/ses-2/mri/hammers_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V6/qx/MD5E-s160638--0cbecef5b57f57da31b1fe801c590367.nii.gz/MD5E-s160638--0cbecef5b57f57da31b1fe801c590367.nii.gz

SWU_4/sub-0025798/ses-2/mri/ibsr_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025798/ses-2/mri/ibsr_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/4J/MD5E-s168356--3e58b9636141da8972b3273e498df7f4.nii.gz/MD5E-s168356--3e58b9636141da8972b3273e498df7f4.nii.gz

SWU_4/sub-0025798/ses-2/mri/it_sub-0025798_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/jv/MD5E-s285--d4d2defb9c09a0c9d5f4673db78ae7af.mat/MD5E-s285--d4d2defb9c09a0c9d5f4673db78ae7af.mat

SWU_4/sub-0025798/ses-2/mri/it_sub-0025798_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/7G/MD5E-s283--2e034c641d33fee0d3c53ba3533ac2ff.mat/MD5E-s283--2e034c641d33fee0d3c53ba3533ac2ff.mat

SWU_4/sub-0025798/ses-2/mri/iy_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/wp/MD5E-s52795599--ef5f272fc2fd5262967235162444c0ab.nii.gz/MD5E-s52795599--ef5f272fc2fd5262967235162444c0ab.nii.gz

SWU_4/sub-0025798/ses-2/mri/julichbrain_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025798/ses-2/mri/julichbrain_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/93/MD5E-s219119--e4761e48e8580fdf5cea8b5dac88e4fe.nii.gz/MD5E-s219119--e4761e48e8580fdf5cea8b5dac88e4fe.nii.gz

SWU_4/sub-0025798/ses-2/mri/lpba40_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025798/ses-2/mri/lpba40_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V7/6p/MD5E-s157362--e6292360da068b42da91d070136cacad.nii.gz/MD5E-s157362--e6292360da068b42da91d070136cacad.nii.gz

SWU_4/sub-0025798/ses-2/mri/m0wp1sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/j8/MD5E-s2584798--eb7be03bcc7f4054155842470aacc2a6.nii.gz/MD5E-s2584798--eb7be03bcc7f4054155842470aacc2a6.nii.gz

SWU_4/sub-0025798/ses-2/mri/m0wp2sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/Jv/MD5E-s2317625--9df5475867fcb3757204652b3789c4c8.nii.gz/MD5E-s2317625--9df5475867fcb3757204652b3789c4c8.nii.gz

SWU_4/sub-0025798/ses-2/mri/m0wp3sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K0/PW/MD5E-s2622512--19ced931d177cadbaba83ae2cba75eca.nii.gz/MD5E-s2622512--19ced931d177cadbaba83ae2cba75eca.nii.gz

SWU_4/sub-0025798/ses-2/mri/mori_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025798/ses-2/mri/mori_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/vp/MD5E-s186431--66a0c2b070a55e2493e7f5cec22c0a13.nii.gz/MD5E-s186431--66a0c2b070a55e2493e7f5cec22c0a13.nii.gz

SWU_4/sub-0025798/ses-2/mri/mwp1sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/fG/MD5E-s2585827--8305ac7d32699f39629d92bd4e384be9.nii.gz/MD5E-s2585827--8305ac7d32699f39629d92bd4e384be9.nii.gz

SWU_4/sub-0025798/ses-2/mri/mwp2sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wx/Mz/MD5E-s2313961--0ab57532359bc9064f6757d0f8408889.nii.gz/MD5E-s2313961--0ab57532359bc9064f6757d0f8408889.nii.gz

SWU_4/sub-0025798/ses-2/mri/mwp3sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/17/qp/MD5E-s2621638--5cb84de4beb1e9c47cb3f21c6cc49853.nii.gz/MD5E-s2621638--5cb84de4beb1e9c47cb3f21c6cc49853.nii.gz

SWU_4/sub-0025798/ses-2/mri/neuromorphometrics_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025798/ses-2/mri/neuromorphometrics_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/4p/MD5E-s219605--0b5c4eb6353ad67d9ed20cbaabd0ccfe.nii.gz/MD5E-s219605--0b5c4eb6353ad67d9ed20cbaabd0ccfe.nii.gz

SWU_4/sub-0025798/ses-2/mri/p0sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w0/71/MD5E-s755240--413153e65212b691735c88f4a66cb3e1.nii.gz/MD5E-s755240--413153e65212b691735c88f4a66cb3e1.nii.gz

SWU_4/sub-0025798/ses-2/mri/p1sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/p8/MD5E-s797499--717b233c9a4a64b92dd54dc27a338783.nii.gz/MD5E-s797499--717b233c9a4a64b92dd54dc27a338783.nii.gz

SWU_4/sub-0025798/ses-2/mri/p2sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4F/Xf/MD5E-s513904--b5cd2d6f5c288cfbccf3decefcb313d5.nii.gz/MD5E-s513904--b5cd2d6f5c288cfbccf3decefcb313d5.nii.gz

SWU_4/sub-0025798/ses-2/mri/p3sub-0025798_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025798/ses-2/mri/rp1sub-0025798_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025798/ses-2/mri/rp2sub-0025798_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025798/ses-2/mri/rp3sub-0025798_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025798/ses-2/mri/t_sub-0025798_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025798/ses-2/mri/t_sub-0025798_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/3v/MD5E-s284--ee38dbfa0a2dca0943cc5e37a39ba6b0.mat/MD5E-s284--ee38dbfa0a2dca0943cc5e37a39ba6b0.mat

SWU_4/sub-0025798/ses-2/mri/thalamus_sub-0025798_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025798/ses-2/mri/thalamus_sub-0025798_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025798/ses-2/mri/wj_sub-0025798_ses-2_run-1_T1w.nii.gz

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