[DATALAD RUNCMD] Compute BNU_1/sub-0025914/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025914/ses-1/anat/sub-0025914_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025914/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025914/ses-1/label/catROI_sub-0025914_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/7Z/MD5E-s61314--c9eb2a364e5dcd4a6de05a47f1f5998c.mat/MD5E-s61314--c9eb2a364e5dcd4a6de05a47f1f5998c.mat

BNU_1/sub-0025914/ses-1/label/catROI_sub-0025914_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/7v/MD5E-s189376--5c3d16bd44b87e45d7a6174bbd5c8872.xml/MD5E-s189376--5c3d16bd44b87e45d7a6174bbd5c8872.xml

BNU_1/sub-0025914/ses-1/label/catROIs_sub-0025914_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F1/98/MD5E-s120122--08d39f8edac5a87121b691bb9f297738.mat/MD5E-s120122--08d39f8edac5a87121b691bb9f297738.mat

BNU_1/sub-0025914/ses-1/label/catROIs_sub-0025914_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/56/MD5E-s332145--ecedc862ab90798b62ced7a6d0b2340c.xml/MD5E-s332145--ecedc862ab90798b62ced7a6d0b2340c.xml

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/01/MD5E-s131258--214c71cb5e0351de17bbbaca7715247a.nii.gz/MD5E-s131258--214c71cb5e0351de17bbbaca7715247a.nii.gz

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/Jk/MD5E-s147440--4054652851da924d8b19c06c6de6b32d.nii.gz/MD5E-s147440--4054652851da924d8b19c06c6de6b32d.nii.gz

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/KK/MD5E-s199851--84d362421c21f97a6fd3ac8cc1adbd26.nii.gz/MD5E-s199851--84d362421c21f97a6fd3ac8cc1adbd26.nii.gz

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025914/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/Wv/MD5E-s221111--37420332d2f7f124e136958c1252f79b.nii.gz/MD5E-s221111--37420332d2f7f124e136958c1252f79b.nii.gz

BNU_1/sub-0025914/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025914/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GQ/Pm/MD5E-s19562--5d243c4da4b8ae16c03fa6f6c3636e53.nii.gz/MD5E-s19562--5d243c4da4b8ae16c03fa6f6c3636e53.nii.gz

BNU_1/sub-0025914/ses-1/mri/aal3_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025914/ses-1/mri/aal3_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/G0/MD5E-s150701--c520574b6776421dd38e8362e88dfdc1.nii.gz/MD5E-s150701--c520574b6776421dd38e8362e88dfdc1.nii.gz

BNU_1/sub-0025914/ses-1/mri/anatomy3_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025914/ses-1/mri/anatomy3_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Q/f7/MD5E-s106327--5831d9ed934f4d7a276a98f277c45871.nii.gz/MD5E-s106327--5831d9ed934f4d7a276a98f277c45871.nii.gz

BNU_1/sub-0025914/ses-1/mri/anon_misub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/M9/MD5E-s3592385--30e36b1e13b30ca99bba5ae246d9aee5.nii.gz/MD5E-s3592385--30e36b1e13b30ca99bba5ae246d9aee5.nii.gz

BNU_1/sub-0025914/ses-1/mri/anon_msub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/QG/MD5E-s9745134--31dc34496eb7705636b3f487161f21fa.nii.gz/MD5E-s9745134--31dc34496eb7705636b3f487161f21fa.nii.gz

BNU_1/sub-0025914/ses-1/mri/cat_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x2/z3/MD5E-s83624--892eb5e45afb15d8b9fde4da92321cc1.nii.gz/MD5E-s83624--892eb5e45afb15d8b9fde4da92321cc1.nii.gz

BNU_1/sub-0025914/ses-1/mri/cobra_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025914/ses-1/mri/cobra_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JW/5P/MD5E-s39493--8969a3bf80891d0dd17f8c59b7c9446b.nii.gz/MD5E-s39493--8969a3bf80891d0dd17f8c59b7c9446b.nii.gz

BNU_1/sub-0025914/ses-1/mri/hammers_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025914/ses-1/mri/hammers_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/Q3/MD5E-s120141--5be06eea5a214bbd38219b436aa2aab0.nii.gz/MD5E-s120141--5be06eea5a214bbd38219b436aa2aab0.nii.gz

BNU_1/sub-0025914/ses-1/mri/ibsr_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025914/ses-1/mri/ibsr_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F5/3v/MD5E-s124783--25028f427295a2b0fd0264d0df41ce4f.nii.gz/MD5E-s124783--25028f427295a2b0fd0264d0df41ce4f.nii.gz

BNU_1/sub-0025914/ses-1/mri/it_sub-0025914_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w7/90/MD5E-s284--3f42261a9aa117d2e416a76c71bd65e7.mat/MD5E-s284--3f42261a9aa117d2e416a76c71bd65e7.mat

BNU_1/sub-0025914/ses-1/mri/it_sub-0025914_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/8m/MD5E-s281--adccc6b0a7c56d53d48a380ab6e14036.mat/MD5E-s281--adccc6b0a7c56d53d48a380ab6e14036.mat

BNU_1/sub-0025914/ses-1/mri/iy_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/Kj/MD5E-s30875527--840962c7251191fba732ef654d73b082.nii.gz/MD5E-s30875527--840962c7251191fba732ef654d73b082.nii.gz

BNU_1/sub-0025914/ses-1/mri/julichbrain_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025914/ses-1/mri/julichbrain_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/64/MD5E-s159193--c937487b59a45675cba567ab18d4aeb5.nii.gz/MD5E-s159193--c937487b59a45675cba567ab18d4aeb5.nii.gz

BNU_1/sub-0025914/ses-1/mri/lpba40_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025914/ses-1/mri/lpba40_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/FM/MD5E-s117590--26eec0927dd662429041d4d7f7f3beea.nii.gz/MD5E-s117590--26eec0927dd662429041d4d7f7f3beea.nii.gz

BNU_1/sub-0025914/ses-1/mri/m0wp1sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/p2/MD5E-s2588996--323ce8503ac36756ecc23ecda54257b9.nii.gz/MD5E-s2588996--323ce8503ac36756ecc23ecda54257b9.nii.gz

BNU_1/sub-0025914/ses-1/mri/m0wp2sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/JK/MD5E-s2293875--5d69ac2c1ad3dfac7de367b0c8c14c08.nii.gz/MD5E-s2293875--5d69ac2c1ad3dfac7de367b0c8c14c08.nii.gz

BNU_1/sub-0025914/ses-1/mri/m0wp3sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/4k/MD5E-s2589709--f58ddfa386068270fdb0843f36a7cdc5.nii.gz/MD5E-s2589709--f58ddfa386068270fdb0843f36a7cdc5.nii.gz

BNU_1/sub-0025914/ses-1/mri/mori_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025914/ses-1/mri/mori_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/vM/MD5E-s137970--c0324443beb8eb62b4c9b22f2f1cf3e4.nii.gz/MD5E-s137970--c0324443beb8eb62b4c9b22f2f1cf3e4.nii.gz

BNU_1/sub-0025914/ses-1/mri/mwp1sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/Vf/MD5E-s2597247--3f3270bf657406807a1db05942ad9b53.nii.gz/MD5E-s2597247--3f3270bf657406807a1db05942ad9b53.nii.gz

BNU_1/sub-0025914/ses-1/mri/mwp2sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z4/5j/MD5E-s2299061--bdf52d668aaaa9523e61afa49024c009.nii.gz/MD5E-s2299061--bdf52d668aaaa9523e61afa49024c009.nii.gz

BNU_1/sub-0025914/ses-1/mri/mwp3sub-0025914_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025914/ses-1/mri/neuromorphometrics_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025914/ses-1/mri/neuromorphometrics_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025914/ses-1/mri/p0sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/xW/MD5E-s682552--b088134fcdf6f28ed569b91432464f96.nii.gz/MD5E-s682552--b088134fcdf6f28ed569b91432464f96.nii.gz

BNU_1/sub-0025914/ses-1/mri/p1sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025914/ses-1/mri/p2sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/W2/MD5E-s459736--ebc2019cbeb30171b4b9ce509303d938.nii.gz/MD5E-s459736--ebc2019cbeb30171b4b9ce509303d938.nii.gz

BNU_1/sub-0025914/ses-1/mri/p3sub-0025914_ses-1_run-1_T1w.nii.gz

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BNU_1/sub-0025914/ses-1/mri/rp1sub-0025914_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025914/ses-1/mri/rp2sub-0025914_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025914/ses-1/mri/rp3sub-0025914_ses-1_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025914/ses-1/mri/t_sub-0025914_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/Kk/MD5E-s283--2fdf6b3534c84563712c69e0f7800805.mat/MD5E-s283--2fdf6b3534c84563712c69e0f7800805.mat

BNU_1/sub-0025914/ses-1/mri/t_sub-0025914_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025914/ses-1/mri/thalamus_sub-0025914_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025914/ses-1/mri/thalamus_sub-0025914_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025914/ses-1/mri/wj_sub-0025914_ses-1_run-1_T1w.nii.gz

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