[DATALAD RUNCMD] Compute MRN/sub-0027016/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027016/ses-3/anat/sub-0027016_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027016/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027016/ses-3/label/catROI_sub-0027016_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/VX/MD5E-s61210--5442d023a39a3dfff7c2e05ccb09ff10.mat/MD5E-s61210--5442d023a39a3dfff7c2e05ccb09ff10.mat

MRN/sub-0027016/ses-3/label/catROI_sub-0027016_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jF/GJ/MD5E-s188414--d84cf98787828d94ea4c0ffb61988b16.xml/MD5E-s188414--d84cf98787828d94ea4c0ffb61988b16.xml

MRN/sub-0027016/ses-3/label/catROIs_sub-0027016_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/wx/MD5E-s120027--edeb12c09d742847bfc48b0cd4e434a0.mat/MD5E-s120027--edeb12c09d742847bfc48b0cd4e434a0.mat

MRN/sub-0027016/ses-3/label/catROIs_sub-0027016_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/qm/MD5E-s332160--2d97239c6eb563e9b85e6c57fb5fb066.xml/MD5E-s332160--2d97239c6eb563e9b85e6c57fb5fb066.xml

MRN/sub-0027016/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027016/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j0/Jk/MD5E-s185425--18d1fa2b6ada2a19979f92f575928d8d.nii.gz/MD5E-s185425--18d1fa2b6ada2a19979f92f575928d8d.nii.gz

MRN/sub-0027016/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027016/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/9P/MD5E-s206958--4e971076fa3b3f61718684fb401a78f5.nii.gz/MD5E-s206958--4e971076fa3b3f61718684fb401a78f5.nii.gz

MRN/sub-0027016/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027016/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/G6/MD5E-s276174--95cea8da65e68f08e9a935c601e164a4.nii.gz/MD5E-s276174--95cea8da65e68f08e9a935c601e164a4.nii.gz

MRN/sub-0027016/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027016/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027016/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027016_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027016/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027016/ses-3/mri/aal3_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/aal3_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/anatomy3_sub-0027016_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027016/ses-3/mri/anatomy3_sub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027016/ses-3/mri/anon_misub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/MW/MD5E-s10036315--7871ad51c6fff0495fb899c29a6c0f9d.nii.gz/MD5E-s10036315--7871ad51c6fff0495fb899c29a6c0f9d.nii.gz

MRN/sub-0027016/ses-3/mri/anon_msub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/cat_sub-0027016_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027016/ses-3/mri/cobra_sub-0027016_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027016/ses-3/mri/cobra_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/hammers_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/hammers_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/ibsr_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/ibsr_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/it_sub-0027016_ses-3_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/6X/ZG/MD5E-s283--f19ec27d140e454d8b7fc61f1395126b.mat/MD5E-s283--f19ec27d140e454d8b7fc61f1395126b.mat

MRN/sub-0027016/ses-3/mri/it_sub-0027016_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3x/v6/MD5E-s284--4d6f11950cb8c3110f81cfd467b0350c.mat/MD5E-s284--4d6f11950cb8c3110f81cfd467b0350c.mat

MRN/sub-0027016/ses-3/mri/iy_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/julichbrain_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/julichbrain_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/lpba40_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/lpba40_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/m0wp1sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/m0wp2sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/m0wp3sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/mori_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/mori_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/mwp1sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/mwp2sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/mwp3sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/neuromorphometrics_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/neuromorphometrics_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/p0sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/p1sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/p2sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/p3sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/rp1sub-0027016_ses-3_run-1_T1w_affine.nii.gz

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MRN/sub-0027016/ses-3/mri/rp2sub-0027016_ses-3_run-1_T1w_affine.nii.gz

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MRN/sub-0027016/ses-3/mri/rp3sub-0027016_ses-3_run-1_T1w_affine.nii.gz

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MRN/sub-0027016/ses-3/mri/t_sub-0027016_ses-3_run-1_T1w_affine_reorient.mat

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MRN/sub-0027016/ses-3/mri/t_sub-0027016_ses-3_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027016/ses-3/mri/thalamus_sub-0027016_ses-3_run-1_T1w.csv

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MRN/sub-0027016/ses-3/mri/thalamus_sub-0027016_ses-3_run-1_T1w.nii.gz

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MRN/sub-0027016/ses-3/mri/wj_sub-0027016_ses-3_run-1_T1w.nii.gz

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